View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_high_9 (Length: 316)
Name: NF18536_high_9
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 92 - 309
Target Start/End: Original strand, 2299044 - 2299261
Alignment:
| Q |
92 |
agtttgcccatactaaggtttttcgttcctgtttgcaggtcacatttgccacactatattgtcagtttttaatccatttacatgtcagaagttttgttgt |
191 |
Q |
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| T |
2299044 |
agttcgcccatactaaggtttttcgttcatgtttgcaggtcacatttgccacactatattgtcagttttccatccatttacatgtcagaagttttgttgt |
2299143 |
T |
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| Q |
192 |
aatgggtctagcaatctttaattataggagtcttctaaggttgtgaagacgtaccatagaccttttggttaatgctgttactatcccttattataaaagc |
291 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| |
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| T |
2299144 |
aatgggtctagcaatctttaactataggagtcttccaaggttgtgaagacgtaccatagacctttcggttaatgttgctactatcccttattataaaagc |
2299243 |
T |
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| Q |
292 |
taaaattcatattcttcg |
309 |
Q |
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||||||||||||| |||| |
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| T |
2299244 |
taaaattcatattgttcg |
2299261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 2298905 - 2298998
Alignment:
| Q |
4 |
acatgataaatgagttactcaacttctcactatctcattttaaacactactttgtgtggttcatatgatgaatgagtttaatcgtaggagtttg |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2298905 |
acatgataaatgagttactcaacttctcactatctcatttataacactactttgtgtggttcatatgatgaatgagtttaattgtaggagtttg |
2298998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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