View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_low_1 (Length: 772)
Name: NF18536_low_1
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 243 - 755
Target Start/End: Original strand, 2019716 - 2020212
Alignment:
| Q |
243 |
ccaaagatgcttatttaaatattggggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaacttggtaacatgttagcatag |
342 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019716 |
ccaaagatgcttatttaaatattagggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaacttggtaacatgttagcatag |
2019815 |
T |
|
| Q |
343 |
ggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaacttttag |
442 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019816 |
ggaatttgttaatgaactaaattttgaaa----atattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaacttttag |
2019911 |
T |
|
| Q |
443 |
tttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatccaaactttaataattgctctaaatgccctatgagcgcatgttagctaaaccca |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2019912 |
tttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatccaaactttaataattgctctaaatgccctatgagcacatgttagctaaaccca |
2020011 |
T |
|
| Q |
543 |
aactttaaccattgctctaatagattcttacatctaacttctgttaagtctacattaaccattgagttaggttttgatttcgcggaatgtgaattgnnnn |
642 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2020012 |
aacttta-----------aatagattcttacatctaacttctgttaagtctacattaaccattgagttaggttttgatttcgcagaatgtgaattg-aaa |
2020099 |
T |
|
| Q |
643 |
nnnttgtgatggagttgagaatgtttttgttatattttggggtaaaaaatgttgatatttgacgacgaaagcattgatataccgttatgctagtcttggt |
742 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2020100 |
aaattgtgatggagttgagaatgtttttgttatattttggggtaaaaaatgttaatatttgacgacgaaagcattgatataccgttatgctagtcttggt |
2020199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 324 - 593
Target Start/End: Original strand, 2036519 - 2036786
Alignment:
| Q |
324 |
tggtaacatgttagcatagggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtctt |
423 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
2036519 |
tggtaatatgttagcatagggaatttgttaatgaactaaattttgaaacattatatgtgaaattgtatatttaatttcttgaaagtttacaaattgtctt |
2036618 |
T |
|
| Q |
424 |
ttttatcacaaacttttagtttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatccaaactttaataattgctctaaatgccctatgag |
523 |
Q |
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||||| |||||||||||| ||| |||||||||||||||| ||||||| | ||||||||||||||||| ||||||||| |||||||||| ||||||| ||| |
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| T |
2036619 |
ttttaacacaaacttttaatttgtattctttaacaagtg-ccctaagagagcatgttagcaaaatcc-aactttaatcattgctctaagtgccctaagag |
2036716 |
T |
|
| Q |
524 |
cgcatgttagctaaacccaaactttaaccattgctctaatagattcttacatctaacttctgttaagtct |
593 |
Q |
| |
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|| |||||||| | ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2036717 |
cggatgttagcaatgcccaaacttcaatcattgctctaatagattcttacatctaacttctgttaagtct |
2036786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 2019480 - 2019652
Alignment:
| Q |
8 |
cgaagaatatctacgaaaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctgc |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019480 |
cgaacaatatctacgaaaatgctaacaatggagattaaatctcaaaacaccatggccaacaatatgccatcaaatgaaggtggtcccaggaataatctgc |
2019579 |
T |
|
| Q |
108 |
ccgatcaaggtaagcatgtgttttctggggaattggtggttgt-ttcgggtatgataccaaagttggcaaatc |
179 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2019580 |
ccgatcaaggtaagcatgtgttttctggggaattggtggttgtattcgggtatgataccaaagttggcaaatc |
2019652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 2036209 - 2036381
Alignment:
| Q |
8 |
cgaagaatatctacgaaaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctgc |
107 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
2036209 |
cgaaaaatatctatgaaaatgctaacaatggagaataaatctcaaaacaccatggccaacaatatgctatcaaatgaaggtggtcccagcaataatctgc |
2036308 |
T |
|
| Q |
108 |
ccgatcaaggtaagcatgtgttttctggggaattggtggttgt-ttcgggtatgataccaaagttggcaaatc |
179 |
Q |
| |
|
||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2036309 |
ccgatcaaggtaagcatattttttctagggaattggtggttgtaatcgggtatgataccaaagttggcaaatc |
2036381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 1990514 - 1990686
Alignment:
| Q |
8 |
cgaagaatatctacgaaaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctgc |
107 |
Q |
| |
|
|||| ||||||| ||||||| |||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
1990514 |
cgaaaaatatctttgaaaatggtaacaatggagaataaatctcaaaacaccatggccaacaatttgccatcaaatgaaggtggtcccagaaataatctgc |
1990613 |
T |
|
| Q |
108 |
ccgatcaaggtaagcatgtgttttctggggaattggtggttgt-ttcgggtatgataccaaagttggcaaatc |
179 |
Q |
| |
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||| ||||||||||||| |||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
1990614 |
ccggtcaaggtaagcatatgttttctagggaattggtggttgtattcatgtatgataccaaagttggcaaatc |
1990686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 340 - 435
Target Start/End: Original strand, 1994504 - 1994599
Alignment:
| Q |
340 |
tagggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaa |
435 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| | ||| ||||| ||||||| |||||||| |
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| T |
1994504 |
tagggaatgtgttaatgaactaaatattgaaacattatattggaaatggtgtatttcatttcttgaaattttttaaattatctttttcatcacaaa |
1994599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 1990745 - 1990805
Alignment:
| Q |
264 |
ttggggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaactt |
324 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
1990745 |
ttggggcatttgcaaagaactagcagaaactgagtgtagccttattttgttacttaaactt |
1990805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 243 - 282
Target Start/End: Original strand, 2036408 - 2036447
Alignment:
| Q |
243 |
ccaaagatgcttatttaaatattggggcatttgcaaagta |
282 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2036408 |
ccaaagatgcttatttaaatattagggcatttgcaaagta |
2036447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 582
Target Start/End: Original strand, 1994641 - 1994697
Alignment:
| Q |
526 |
catgttagctaaacccaaactttaaccattgctctaatagattcttacatctaactt |
582 |
Q |
| |
|
||||||||| | || |||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
1994641 |
catgttagcaagactcaaactttaatcattgctctaatagattctaccatctaactt |
1994697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 2022088 - 2022136
Alignment:
| Q |
8 |
cgaagaatatctacgaaaatgctaacaatggatattaaatctcaaaaca |
56 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
2022088 |
cgaaaaatatctacgaaaatgctaacaatggagaatagatctcaaaaca |
2022136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 658 - 704
Target Start/End: Original strand, 2017743 - 2017789
Alignment:
| Q |
658 |
tgagaatgtttttgttatattttggggtaaaaaatgttgatatttga |
704 |
Q |
| |
|
|||||||||||||||||||||||| | || |||||||| |||||||| |
|
|
| T |
2017743 |
tgagaatgtttttgttatattttgagatacaaaatgttaatatttga |
2017789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 48204664 - 48204621
Alignment:
| Q |
15 |
tatctacgaaaatgctaacaatggatattaaatctcaaaacacc |
58 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
48204664 |
tatctatgaaaatgctaacaatggagaataaatctcaaaacacc |
48204621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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