View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_low_10 (Length: 354)
Name: NF18536_low_10
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 5 - 338
Target Start/End: Complemental strand, 13978234 - 13977901
Alignment:
| Q |
5 |
tatctgcatatggagtagaaatcaaagtaatatgaggagctgnnnnnnnnnnnnnnnnggcttgtacnnnnnnnnttatatcctgtgaaataagatttcg |
104 |
Q |
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| T |
13978234 |
tatctgcatatggagtagaaatcaaagtaatatgaggagctgtttatttttattttttggcttgtacaaaaaaaattatatcttgtgaaataagatttcg |
13978135 |
T |
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| Q |
105 |
tgtgaataaactctggtttatcacaagaaaatgaaacataagtggctagttggtgacaacgccacgaatgagttggtgcatgtaaaatgagttccataat |
204 |
Q |
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| T |
13978134 |
tctgaataaactctggtttatcacaagaaaatgaaacataagtgtctagttggtgacaacgccacgaatgagttggtgcatgtaaaatgagttccataat |
13978035 |
T |
|
| Q |
205 |
tttccaattccacaacttttctttctaattttgaggnnnnnnnnnaacataaaatacgaatagccaattccattttatttc-nnnnnnnataaggaaaat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13978034 |
tttccaattccacaacttttctttctaattttgagg-ttttttttaagataaaatacgaatagccaattccattttatttcttttttttataaggaaaat |
13977936 |
T |
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| Q |
304 |
ttatggttaatagatgatgatctagtccaaagtag |
338 |
Q |
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|||| |||||||||||||| ||||||||||||||| |
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| T |
13977935 |
ttatagttaatagatgatgctctagtccaaagtag |
13977901 |
T |
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