View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18536_low_12 (Length: 314)
Name: NF18536_low_12
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 53067091 - 53066800
Alignment:
| Q |
17 |
aaaatccacgccttcagagttcttcctttacttccttcttcattggtttttt-atccctccctctttcttcattgtcctcatcatatttgaggtattttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53067091 |
aaaatccacgccttcagagttcttcctttacttccttcttcattggtttttttatccctccctctttcttcattgtcctcatcatatttgaggtattttc |
53066992 |
T |
|
| Q |
116 |
attcgttttcaattttagttgataattgaatctattatgtctgtttgattcgaatcttctcaaatttgtgagattagggtttgtaacctttgaattga-- |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53066991 |
attcgttttcaattttagttgataattgaatctattatgtctgtttgattcgaatcttctcaaatttgtgagattagggtttgtaacctttgaattgatt |
53066892 |
T |
|
| Q |
214 |
-tttcnnnnnnnatgtgaaatagaatgttttgtgatggaattaaacctttgaatttcttgtatgtttcttaatcaattcaatctgttctgtg |
304 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
53066891 |
ttttttttttttatgtgaaatagaatgttttgtgatggaattaaacctttgaatttcttgtatgtttctttatcaattcaatctgttctgtg |
53066800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 91 - 261
Target Start/End: Original strand, 53362257 - 53362425
Alignment:
| Q |
91 |
tcctcatcatatttgaggtattttcattcgttttcaattttagttgataattgaatctattatgtctgtttgattcgaatcttctcaaatttgtgagatt |
190 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
53362257 |
tcctcatcatgtttgaggtattttcattccttttcaattctagttgataattgaatctattatgtttgtttgattcgaatcttctcaaatttgtgagatt |
53362356 |
T |
|
| Q |
191 |
agggtttgtaacctttgaattgatttcnnnnnnnatgtgaaatagaatgttttgtgatggaattaaacctt |
261 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53362357 |
agggtttgtaacctttgaattgattt--atttttatgtgaaatagaatgttttatgatggaattaaacctt |
53362425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 53075504 - 53075313
Alignment:
| Q |
17 |
aaaatccacgccttcagagttcttcctttacttccttcttcattggtttttt--atccctccctctttcttcattgtcctcatcatatttgaggtatttt |
114 |
Q |
| |
|
||||||||||||||||||||| | ||| |||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
53075504 |
aaaatccacgccttcagagtttgttgttttcttctttcttcattggttttttttatccccccctctttcttcatcgtcctcatcatatataaggtatttt |
53075405 |
T |
|
| Q |
115 |
cattcgttttcaattttagttgataattgaatctattatgtctgtttgattcgaatcttctcaaatttgtgagattagggtttgtaaccttt |
206 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
53075404 |
cattccttttcaattctagttgataattatatctattatgtcaatttgattcgaatcttcttgaatttttgggattagggtttgtaaccttt |
53075313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 53329914 - 53330017
Alignment:
| Q |
155 |
tctgtttgattcgaatcttctcaaatttgtgagattagggtttgtaacctttgaattgatttcnnnnnnnatgtgaaatagaatgttttgtgatggaatt |
254 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53329914 |
tctgtttgattcgactcttctcaaatttgtgagattagggtttgtaacttttgaattgattt---tttttatgtgaaatagaatgttttgtgatggaatt |
53330010 |
T |
|
| Q |
255 |
aaacctt |
261 |
Q |
| |
|
||||||| |
|
|
| T |
53330011 |
aaacctt |
53330017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 53333598 - 53333701
Alignment:
| Q |
155 |
tctgtttgattcgaatcttctcaaatttgtgagattagggtttgtaacctttgaattgatttcnnnnnnnatgtgaaatagaatgttttgtgatggaatt |
254 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53333598 |
tctgtttgattcgactcttctcaaatttgtgagattagggtttgtaacttttgaattgattt---tttttatgtgaaatagaatgttttgtgatggaatt |
53333694 |
T |
|
| Q |
255 |
aaacctt |
261 |
Q |
| |
|
||||||| |
|
|
| T |
53333695 |
aaacctt |
53333701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 155 - 261
Target Start/End: Original strand, 53337275 - 53337378
Alignment:
| Q |
155 |
tctgtttgattcgaatcttctcaaatttgtgagattagggtttgtaacctttgaattgatttcnnnnnnnatgtgaaatagaatgttttgtgatggaatt |
254 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53337275 |
tctgtttgattcgactcttctcaaatttgtgagattagggtttgtaacttttgaattgattt---tttttatgtgaaatagaatgttttgtgatggaatt |
53337371 |
T |
|
| Q |
255 |
aaacctt |
261 |
Q |
| |
|
||||||| |
|
|
| T |
53337372 |
aaacctt |
53337378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 53362446 - 53362483
Alignment:
| Q |
270 |
ttgtatgtttcttaatcaattcaatctgttctgtgctg |
307 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53362446 |
ttgtatgtttctttatcaattcaatctgttctgtgctg |
53362483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 53330040 - 53330072
Alignment:
| Q |
272 |
gtatgtttcttaatcaattcaatctgttctgtg |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
53330040 |
gtatgtttctttatcaattcaatctgttctgtg |
53330072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 53333724 - 53333756
Alignment:
| Q |
272 |
gtatgtttcttaatcaattcaatctgttctgtg |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
53333724 |
gtatgtttctttatcaattcaatctgttctgtg |
53333756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 53337401 - 53337433
Alignment:
| Q |
272 |
gtatgtttcttaatcaattcaatctgttctgtg |
304 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
|
|
| T |
53337401 |
gtatgtttctttatcaattcaatctgttctgtg |
53337433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University