View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_low_17 (Length: 268)
Name: NF18536_low_17
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 16497287 - 16497533
Alignment:
| Q |
1 |
acccactccagctgaattcgaagatccaatcgaatacattttcaagatcaaaaaccaagctttcaaatttgaaatctgcaaaatcatccctccttttccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16497287 |
acccactccagctgaattcgaagatccaatcgaatacattttcaagatcaaaaaccaagcttccaaatttgaaatctgcaaaatcatccctccttttccc |
16497386 |
T |
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| Q |
101 |
ccgttaaacgacccgtttggtagggtggggaccactacactttctctgagtttgaaatcaaagccaaatggtttgaaaaaagttacatgaacaagaagaa |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
16497387 |
ccgttaaacgacccgtttggtagagtggggaccactacactttctctgagtttgaaatcaaagccaaatggtttgaaaaaagttacatgaacaagaaaaa |
16497486 |
T |
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| Q |
201 |
gaaaaacagtaacaatgctcttgaaatagagacattgttctggaaag |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16497487 |
gaaaaacagtaacaatgctcttgaaatagagacattgttctggaaag |
16497533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 40778849 - 40779084
Alignment:
| Q |
1 |
acccactccagctgaattcgaagatccaatcgaatacattttcaagatcaaaaaccaagctttcaaatttgaaatctgcaaaatcatccctccttttccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| | |||||||||||||||||||||||||||| |
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| T |
40778849 |
acccactccagctgaattcgaagatccaatcgaatacattttaaagatcgaaaaccaagcttccaaattcggaatctgcaaaatcatccctccttttccc |
40778948 |
T |
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| Q |
101 |
ccgttaaacgacccgtttggtagggtggggaccactacactttctctgagtttgaaatcaaagccaaatggtttgaaaaaagttacatgaacaagaagaa |
200 |
Q |
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| T |
40778949 |
ctgttaaacgacccatttggtagagttgggaccactacactt--tatgagtttgaaatcaaagccaaatggat--aa-------atatgaacaagaagaa |
40779037 |
T |
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| Q |
201 |
gaaaaacagtaacaatgctcttgaaatagagacattgttctggaaag |
247 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40779038 |
gaaaaacagtaacagtgctcttgaaatagagacattgttctggaaag |
40779084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 100 - 248
Target Start/End: Complemental strand, 34224268 - 34224120
Alignment:
| Q |
100 |
cccgttaaacgacccgtttggtagggtggggaccactacactttctctgagtttgaaatcaaagccaaatggtttgaaaaaagttacatgaacaagaaga |
199 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||| |
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| T |
34224268 |
cccgttaaacgacccgtttggcagagtggggaccactacactttctctgagtttgaagccaaagcaaaatggttcgaaagaagttacatgaacaagaaga |
34224169 |
T |
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| Q |
200 |
agaaaaacagtaacaatgctcttgaaatagagacattgttctggaaagc |
248 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34224168 |
agaaaaacagtaacagtgctcttgaaatagagacattgttctggaaagc |
34224120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 34224473 - 34224375
Alignment:
| Q |
1 |
acccactccagctgaattcgaagatccaatcgaatacattttcaagatcaaaaaccaagctttcaaatttgaaatctgcaaaatcatccctccttttcc |
99 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||| |||||| | |||||||||||| |||||||||||||| |
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| T |
34224473 |
acccactccagctgaattcgaagatccaatcgcatacattttcaagatcgaaaacgaagcttccaaattcggaatctgcaaaattatccctccttttcc |
34224375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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