View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18536_low_2 (Length: 607)

Name: NF18536_low_2
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18536_low_2
NF18536_low_2
[»] chr4 (8 HSPs)
chr4 (16-580)||(51145006-51145571)
chr4 (16-580)||(51156146-51156712)
chr4 (16-379)||(29937357-29937720)
chr4 (39-334)||(51199242-51199537)
chr4 (39-310)||(51212412-51212683)
chr4 (465-580)||(29937827-29937942)
chr4 (481-574)||(51198951-51199044)
chr4 (525-578)||(51212185-51212238)
[»] chr3 (4 HSPs)
chr3 (16-334)||(49737308-49737626)
chr3 (39-345)||(36285589-36285895)
chr3 (489-571)||(36285374-36285456)
chr3 (489-574)||(49737917-49738002)
[»] chr1 (1 HSPs)
chr1 (39-179)||(38525898-38526038)
[»] chr2 (1 HSPs)
chr2 (232-314)||(5765099-5765181)


Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 16 - 580
Target Start/End: Complemental strand, 51145571 - 51145006
Alignment:
16 tcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaactaacaactgtggatttaccactcccactttgccctaccaaagctgcagtag 115  Q
    |||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
51145571 tcaatgagaacttcaccatctgttggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtag 51145472  T
116 tgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacatccctgagctctatgtctccacgaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51145471 tgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacatccctgagctctatgtctccacgaat 51145372  T
216 gtcatcgagttttttcccactagtgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaaa 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51145371 gtcatcaagttttttcccactagtgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaaa 51145272  T
316 gcacttaggcttggagatgtctgcccaagacaccttgggttgcaaacagagatatagttaggag-nnnnnnncatcttcatatcttatgagtggaaagga 414  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||||||    
51145271 gcacttaggcttggagatgtctgcccaagacaccttgggttggaaacagagatatagttaggagaaaaaaaacatcttcatatcttatgagtggaaagga 51145172  T
415 ataaattgtagaaatattaggctcatagaaagggagaaaaagaaaacaaatcttacgttgaaccaatcaatacagcaaaaattacagtcataacgtcccc 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51145171 ataaattgtagaaatattaggctcatagaaagggagaaaaagaaaacaaatcttacgttgaaccaatcaatacagcaaaaattacagtcataacgtcccc 51145072  T
515 tcctgcgtatcctttctcaattatcattttcccaccaaaccatacagccaaaccataactgcagat 580  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51145071 tcctgtgtatcctttctcaattatcattttcccaccaaaccatacagccaaaccataactgcagat 51145006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 580
Target Start/End: Complemental strand, 51156712 - 51156146
Alignment:
16 tcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaactaacaactgtggatttaccactcccactttgccctaccaaagctgcagtag 115  Q
    |||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
51156712 tcaatgagaacttcaccatctgttggatcatagaatctctctatcaaactaacaactgtggatttcccacttccactttgccctaccaaagctgcagtag 51156613  T
116 tgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacatccctgagctctatgtctccacgaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||    
51156612 tgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacattcttgagctctatgtctccatgaat 51156513  T
216 gtcatcgagttttttcccactagtgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaaa 315  Q
    |||||| || |||  ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
51156512 gtcatcaagctttcgcccactagtgtcataagcatcaatttccggcatccttttaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaaa 51156413  T
316 gcacttaggcttggagatgtctgcccaagacaccttgggttgcaaacagagatatagttaggag-nnnnnnncatcttc--atatcttatgagtggaaag 412  Q
    |||||||||||||| |||||||||||||| ||||| |||||| ||||  | |||||||||||||        ||| |||  |||||||| ||||||||||    
51156412 gcacttaggcttggggatgtctgcccaaggcacctggggttggaaac--aaatatagttaggagaaagaaaacatgttcatatatcttacgagtggaaag 51156315  T
413 gaataaattgtagaaatattaggctcatagaaagggag-aaaaagaaaacaaatcttacgttgaaccaatcaatacagcaaaaattacagtcataacgtc 511  Q
     |||||||| |||||||  | ||||||||| || | || ||||| || ||||||||||| |||||||| |||||||||||||||||||||||||||| ||    
51156314 aaataaattttagaaattattggctcatagtaaagaagaaaaaacaacacaaatcttacattgaaccagtcaatacagcaaaaattacagtcataacatc 51156215  T
512 ccctcctgcgtatcctttctcaattatcattttcccaccaaaccatacagccaaaccataactgcagat 580  Q
    ||| ||||  ||||||||||| ||||||| |||||||||| |||| |||||||||||||||||| ||||    
51156214 cccacctgtatatcctttctctattatcaatttcccaccataccaaacagccaaaccataactggagat 51156146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 379
Target Start/End: Original strand, 29937357 - 29937720
Alignment:
16 tcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaactaacaactgtggatttaccactcccactttgccctaccaaagctgcagtag 115  Q
    |||||||||| |||||| |  ||||||||||| ||||||||||| ||||| |  ||||| ||||| |||||||||||||||||||||||||||||||| |    
29937357 tcaatgagaacttcaccatttgttggatcatagaatctctctattaaactgatgactgtagatttcccactcccactttgccctaccaaagctgcagtgg 29937456  T
116 tgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacatccctgagctctatgtctccacgaat 215  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||  | |||||||||||||| |||||    
29937457 tgccgctttgtaatgaaagagaaaatccatcgaatatcagttcatctggtcttgtaggataactaaagcacacctctataagctctatgtctccgcgaat 29937556  T
216 gtcatcgagttttttcccactagtgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaaa 315  Q
     ||||| || ||| ||||| |||| ||||| ||||||||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||||||||    
29937557 atcatcaagctttctcccagtagtttcataagcatcaatttctggcttcctttttattgtttcaaacatcttaaaggctgcagcttgtcctgcagcaaaa 29937656  T
316 gcacttaggcttggagatgtctgcccaagacaccttgggttgcaaacagagatatagttaggag 379  Q
    |||||||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||||    
29937657 gcacttaggcttggagatgtttgcccaagacacctggggttggaaacagaaatatagttaggag 29937720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 39 - 334
Target Start/End: Complemental strand, 51199537 - 51199242
Alignment:
39 tggatcataaaatctctctatcaaactaacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaa 138  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||| ||  ||||||    
51199537 tggatcataaaatctctctatcaaactgacaactgtggattttccactcccactttgccctaccaaagctacagtagtcccacttggtattgttagagaa 51199438  T
139 aatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacatccctgagctctatgtctccacgaatgtcatcgagttttttcccactag 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||  |||  | |    
51199437 aatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacctccctaagctctatgtctccacgaatgtcatcaagctttcgcccggttg 51199338  T
239 tgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaaagcacttaggcttggagatg 334  Q
    |||| || ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||| | |||||||||||    
51199337 tgtcgtaagcatcaatttcgggcttccttttaatcgtttcgaacattttaaatgccgcagcttgtcctgcagcaaaagcactcaagcttggagatg 51199242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 39 - 310
Target Start/End: Complemental strand, 51212683 - 51212412
Alignment:
39 tggatcataaaatctctctatcaaactaacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaa 138  Q
    ||||||||||||||||||||||||| | |  ||||| ||||| ||||||||||||||||| || |||||  | ||||| || |||| ||  |||||||||    
51212683 tggatcataaaatctctctatcaaatttatcactgttgattttccactcccactttgcccgactaaagccacggtagtaccacttgatatcgaaagagaa 51212584  T
139 aatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacatccctgagctctatgtctccacgaatgtcatcgagttttttcccactag 238  Q
    ||| |||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||  |||||||||  || |||  |||  |      
51212583 aatgcattgaatattagttcatttggtcttgtaggataactaaagcaaacctccctaagctctatgtctccctgaatgtcattaagctttagcccgattt 51212484  T
239 tgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcag 310  Q
    ||||||| |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||| ||||    
51212483 tgtcataagcatcaatttccggcttccttttgattgtttcaaacatcttaaaggctgcagcttgtccagcag 51212412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 465 - 580
Target Start/End: Original strand, 29937827 - 29937942
Alignment:
465 tcttacgttgaaccaatcaatacagcaaaaattacagtcataacgtcccctcctgcgtatcctttctcaattatcattttcccaccaaaccatacagcca 564  Q
    |||||| |||||||| ||||||  ||||| | |||||||||||| || |||||||  ||||||||||| ||||||| |||||||||||||||||||||||    
29937827 tcttacattgaaccagtcaatattgcaaatagtacagtcataacatcgcctcctgtatatcctttctctattatcaatttcccaccaaaccatacagcca 29937926  T
565 aaccataactgcagat 580  Q
    |||  |||||| ||||    
29937927 aactgtaactggagat 29937942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 481 - 574
Target Start/End: Complemental strand, 51199044 - 51198951
Alignment:
481 tcaatacagcaaaaattacagtcataacgtcccctcctgcgtatcctttctcaattatcattttcccaccaaaccatacagccaaaccataact 574  Q
    |||||||||||||||||| ||||| ||| |||||||| |  ||||||||||| |||| |||||| |||||||||||||| || |||||||||||    
51199044 tcaatacagcaaaaattatagtcacaacttcccctccggtatatcctttctctattaccatttttccaccaaaccatactgctaaaccataact 51198951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 525 - 578
Target Start/End: Complemental strand, 51212238 - 51212185
Alignment:
525 cctttctcaattatcattttcccaccaaaccatacagccaaaccataactgcag 578  Q
    |||||||||| || ||| ||||| |||||||||||||||||| |||||||||||    
51212238 cctttctcaagtaccatcttccctccaaaccatacagccaaagcataactgcag 51212185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 49737308 - 49737626
Alignment:
16 tcaatgagaatttcaccgtcagttggatcataaaatctctctatcaaactaacaactgtggatttaccactcccactttgccctaccaaagctgcagtag 115  Q
    |||||||||||||||||  |   ||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||| ||||||||||| || ||||    
49737308 tcaatgagaatttcaccaccctgtggatcataaaatctctctatcaaactaataaccgtcgatttcccactcccactttgtcctaccaaagccgcggtag 49737407  T
116 tgccgcttggtaatgaaagagaaaatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacatccctgagctctatgtctccacgaat 215  Q
    |||| |||| || ||||| ||||| | ||| |||||||| ||||| ||| |||| |||||||| ||||||||| ||||| || ||||| ||||||  |||    
49737408 tgccacttgatattgaaatagaaagtgcatcgaatatcatttcatttggccttgaaggataaccaaagcaaacttccctaagttctatatctccagaaat 49737507  T
216 gtcatcgagttttttcccactagtgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaaa 315  Q
     ||||| || |   | |||  ||||||||| |||||||| |  |||| ||| || ||  | || ||||| |||| ||| ||||||||||| ||||||||     
49737508 atcatccagctgcctaccagcagtgtcataagcatcaatatttggctgcctctttattatctcaaacattttaatggcggcagcttgtccagcagcaaat 49737607  T
316 gcacttaggcttggagatg 334  Q
    ||| ||| ||| |||||||    
49737608 gcagttaagctcggagatg 49737626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 39 - 345
Target Start/End: Complemental strand, 36285895 - 36285589
Alignment:
39 tggatcataaaatctctctatcaaactaacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggtaatgaaagagaa 138  Q
    |||||||||||  ||||||||||   ||| |||||| ||||| ||||||||||||||||| ||||||||||| || || || ||||||| ||||||||||    
36285895 tggatcataaagcctctctatcaggttaataactgttgatttcccactcccactttgccccaccaaagctgctgttgttccccttggtattgaaagagaa 36285796  T
139 aatccattgaatatcagttcatctggtcttgtaggataactaaagcaaacatccctgagctctatgtctccacgaatgtcatcgagttttttcccactag 238  Q
    ||||| ||||||||   || |||||| |||| |||||||||||| |  || || || || |||||||| |||| ||| ||||| || |  |  ||  | |    
36285795 aatcctttgaatatagcttgatctggccttgaaggataactaaaactcacttctctcagttctatgtccccaccaatatcatcaagctgctgacctgttg 36285696  T
239 tgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaaagcacttaggcttggagatgtctg 338  Q
    | ||||| |||||||| || || ||||| ||||||||||| ||||||||||| || |||||| |||||| ||| ||||| || ||||| ||||||| |||    
36285695 tttcatatgcatcaatatctggtttcctgttaatcgtttcaaacatcttaaatgccgcagctcgtcctgaagctaaagcgctgaggctaggagatgcctg 36285596  T
339 cccaaga 345  Q
     ||||||    
36285595 accaaga 36285589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 489 - 571
Target Start/End: Complemental strand, 36285456 - 36285374
Alignment:
489 gcaaaaattacagtcataacgtcccctcctgcgtatcctttctcaattatcattttcccaccaaaccatacagccaaaccata 571  Q
    ||||| ||||| ||||||| || |||||||| ||| |||||||| | || || ||| ||||||||||||| ||||||||||||    
36285456 gcaaatattacggtcataatgttccctcctgtgtaccctttctctactaccaatttgccaccaaaccatatagccaaaccata 36285374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 574
Target Start/End: Original strand, 49737917 - 49738002
Alignment:
489 gcaaaaattacagtcataacgtcccctcctgcgtatcctttctcaattatcattttcccaccaaaccatacagccaaaccataact 574  Q
    ||||||| |||| | || || ||||||||||  || |||||| | | |||||| ||||| |||||||||||||||||| |||||||    
49737917 gcaaaaaatacacttatgacttcccctcctgtataacctttcgctaatatcatcttccctccaaaccatacagccaaagcataact 49738002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 38525898 - 38526038
Alignment:
39 tggatcataaaatctctctatcaaactaacaactgtggatttaccactcccactttgccctaccaaagctgcagtagtgccgcttggta-atgaaagaga 137  Q
    ||||||||| ||||| |||| |||||||| ||||||||| || ||||| |||||||| || ||||| || || || || ||||||| || ||||| ||||    
38525898 tggatcatagaatctttctaccaaactaataactgtggactttccacttccactttgtccaaccaatgccgcggttgttccgcttgatatatgaa-gaga 38525996  T
138 aaatccattgaatatcagttcatctggtcttgtaggataact 179  Q
     ||||||||||||||||| || || |||||||  ||||||||    
38525997 gaatccattgaatatcagctcctcaggtcttgccggataact 38526038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 314
Target Start/End: Complemental strand, 5765181 - 5765099
Alignment:
232 ccactagtgtcataggcatcaatttccggcttcctattaatcgtttcgaacatcttaaaggctgcagcttgtcctgcagcaaa 314  Q
    ||||| |||||||| ||||||||||  ||||| || ||||| || |||||||| ||| | ||||| ||||| |||||||||||    
5765181 ccacttgtgtcatatgcatcaattttaggctttcttttaattgtctcgaacattttatatgctgctgcttggcctgcagcaaa 5765099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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