View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_low_21 (Length: 239)
Name: NF18536_low_21
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 5365382 - 5365604
Alignment:
| Q |
17 |
atcaacgagtcacgacggttattaccgttaccattaccattgccaactgttactgaatgcaaagcattaacacaattaacagctaaagcttcatcttctt |
116 |
Q |
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| T |
5365382 |
atcaacgagtcacgacggttattaccgttaccattaccattgccaactgttactgaatgcaaagcattaacacaattaacagctaaagcttcatcttctt |
5365481 |
T |
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| Q |
117 |
taatatctaaatccaaaaaattcaaatcagaaagatcgccggagtgatgaataacgttgaatttaaatggaactcccatgagtcttgcgaatttttccat |
216 |
Q |
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| T |
5365482 |
taatatctaaatccaaaaaattcaaatcagaaagatcgccggagtgatgaataacgttgaatttaaatggaactcccatgagtctagcgaatttttccat |
5365581 |
T |
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| Q |
217 |
tctagcaccaatttccttcataa |
239 |
Q |
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| T |
5365582 |
tctagcaccaatttccttcataa |
5365604 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 39987802 - 39987738
Alignment:
| Q |
173 |
ttgaatttaaatggaactcccatgagtcttgcgaatttttccattctagcaccaatttccttcat |
237 |
Q |
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| T |
39987802 |
ttgaatttaaacggcactcccataagcctagcaaatttttccatccttgaaccaatttccttcat |
39987738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Complemental strand, 39987868 - 39987840
Alignment:
| Q |
101 |
aaagcttcatcttctttaatatctaaatc |
129 |
Q |
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| T |
39987868 |
aaagcttcatcttctttaatatctaaatc |
39987840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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