View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18536_low_3 (Length: 570)
Name: NF18536_low_3
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 14 - 554
Target Start/End: Original strand, 22158435 - 22158974
Alignment:
| Q |
14 |
atgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattatttcaattttaggaaa |
113 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22158435 |
atgaattgtttattcctgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattctttcaattttaggaaa |
22158534 |
T |
|
| Q |
114 |
acaccaattcgcgnnnnnnnntatattaggggaaagtaatgagataataaaataaccaaaccataaaattagattcaagaacctacaaaattctttactc |
213 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22158535 |
acaccaattcgcgaaaaaaa-tatattaggggaaagtaatgagatcataaaataaccaaaccataaaattagattcaagaacctataaaattctttactc |
22158633 |
T |
|
| Q |
214 |
catacagttaactcctttgtccaaatcaacaccatcccatgccaatatcttcccctagtacccttgatgtcaagatgcctatctcattacacaaaatgaa |
313 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22158634 |
catatagttaattcctttgtccaaatcaacaccatcccatgccaatatcttcccctagtacctttgatgtcaagatgcctatctcattacacataatgaa |
22158733 |
T |
|
| Q |
314 |
agggcatttcgttggttggtgaggagtgtgacatagcccaaaatattaatacaattataaaccaatgtaggggaaatttgtagaaaaagttaataaaggg |
413 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22158734 |
agggcatttcgttggttgttgaggagtgtgacatagcccaaaatattaatacaattataaattgatgtaggggaaatttgtagaaaaagttaataaaggg |
22158833 |
T |
|
| Q |
414 |
tactatagaaaccaaaaattgatcaataaaatcacaaactaaattatcctctcaaactgagattgaaatnnnnnnnnnnnnntgtatgataaaagtatgt |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | | |||||||||||||| |
|
|
| T |
22158834 |
tactatagaaaccaaaaattgatcaataaaatcaccaactaaattatcctctcaagctgagattgaaataaaaaataaaaagtatgtgataaaagtatgt |
22158933 |
T |
|
| Q |
514 |
atcataccaattgttgctaaatggatgataaaagagataag |
554 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
22158934 |
atcatacccattgttgctaaatggatgatagaagagataag |
22158974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 458
Target Start/End: Complemental strand, 6078120 - 6078032
Alignment:
| Q |
370 |
ataaaccaatgtaggggaaatttgtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcacaaactaaatt |
458 |
Q |
| |
|
||||| || |||| ||||| |||| ||||||||| ||| |||| || |||||||| |||| |||| |||||||||||| ||||||||| |
|
|
| T |
6078120 |
ataaatcattgtaagggaagtttgaagaaaaagtcaatgaaggatataatagaaacaaaaatttgaccaataaaatcaccaactaaatt |
6078032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 462
Target Start/End: Complemental strand, 9766050 - 9766018
Alignment:
| Q |
430 |
aattgatcaataaaatcacaaactaaattatcc |
462 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
9766050 |
aattgaccaataaaatcacaaactaaattatcc |
9766018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 51861577 - 51861098
Alignment:
| Q |
1 |
agaaatcgatcccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattattt |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
51861577 |
agaaatcgactccatgaattgtttatccctgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttaaatattcttt |
51861478 |
T |
|
| Q |
101 |
caattttaggaaaacaccaattcgcgnnnnnnnntatattaggggaaagtaatgagataataaaataaccaaaccataaaattagattcaagaacctaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51861477 |
caattttaggaaaacaccaattcgcggaaaaaa--atattaggggaaagtaatgagataataaaataaccaaaccataaaattagattcaagaacctaca |
51861380 |
T |
|
| Q |
201 |
aaattctttactccatacagttaactcctttgtccaaatcaacaccatcccatgccaatatcttcccctagtacccttgatgtcaagatgcctatctcat |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
51861379 |
aaattctttactccatacagttaattcctttgtccaaatcaacaccatcacatgccaatatcttcccctagtatccttgatgtaaagatgcctatctcat |
51861280 |
T |
|
| Q |
301 |
tacacaaaatgaaagggcatttcgttggttggtgaggagtgtgacatagcccaaaatattaatacaattataaaccaatgtaggggaaatttgtagaaaa |
400 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51861279 |
tacacataatgaaagggcatttcgttggttgctgaggagtgtgacatagcccaaaatattaatacaattataaatcaatgtaggggaaatttgtagaaaa |
51861180 |
T |
|
| Q |
401 |
agttaataaagggtactatagaaaccaaaaattgatcaataaaatcacaaactaaattatcctctcaaactgagattgaaat |
482 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51861179 |
agttaataaagggtactatagaaactaaaaattgatcaataaaatcaccaactaaattatcctctcaaactgagattgaaat |
51861098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 193 - 554
Target Start/End: Original strand, 9333642 - 9334003
Alignment:
| Q |
193 |
aacctacaaaattctttactccatacagttaactcctttgtccaaatcaacaccatcccatgccaatatcttcccctagtacccttgatgtcaagatgcc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9333642 |
aacctacaaaattctttactccatacagttaattcctttgtccaaatcaacaccatgccatgtcaatatcttcccctagtacccttgatgtcaagatgcc |
9333741 |
T |
|
| Q |
293 |
tatctcattacacaaaatgaaagggcatttcgttggttggtgaggagtgtgacatagcccaaaatattaatacaattataaaccaatgtaggggaaattt |
392 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
9333742 |
tatctcattacacacaatgaaagggcatttcgttggttgttgaggagtgtgacatagcccaaaatattaatacaattataaatcaatgtgggggaaattt |
9333841 |
T |
|
| Q |
393 |
gtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcacaaactaaattatcctctcaaactgagattgaaatnnnnnnnnnn |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9333842 |
gtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcaccaactaaattatcctctcaaactgagattgaaataaaaaataaa |
9333941 |
T |
|
| Q |
493 |
nnntgtatgataaaagtatgtatcataccaattgttgctaaatggatgataaaagagataag |
554 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9333942 |
aagtgattgataaaagtatgtatcatacacattgttgctaaatggatgataaaagagataag |
9334003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 9333487 - 9333609
Alignment:
| Q |
1 |
agaaatcgatcccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattattt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9333487 |
agaaatcgaccccatgaattgtttatccatgatatacgttgtgaatggacgtggtcttcaatttatgtgcacaaaaatttgggaaatttgaatattcttt |
9333586 |
T |
|
| Q |
101 |
caattttaggaaaacaccaattc |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9333587 |
caattttaggaaaacaccaattc |
9333609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 13550112 - 13550224
Alignment:
| Q |
370 |
ataaaccaatgtaggggaaatttgtagaaaaagttaataaagggtactatagaaaccaaaaattgatcaataaaatcacaaactaaattatcctctcaaa |
469 |
Q |
| |
|
||||| || |||| ||||| |||| ||||||||| || |||| || |||| || ||||||||| |||||||||||| ||||||||||||| ||| | |
|
|
| T |
13550112 |
ataaatcattgtaagggaagtttgaagaaaaagtccatgaaggatataataggaaaaaaaaattgaccaataaaatcaccaactaaattatccattcata |
13550211 |
T |
|
| Q |
470 |
ctgagattgaaat |
482 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
13550212 |
ctgaaattgaaat |
13550224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University