View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_low_4 (Length: 543)
Name: NF18536_low_4
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Original strand, 24970397 - 24970927
Alignment:
| Q |
1 |
acttactttggacaactccaatcaccaggatatttcttggaatttgggtttggccactctcctggatatttattgg-atttgggtttgactcttgacaac |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24970397 |
acttactttggacaactccaatcaccaggatatttcttggaatttgggtttggccactctcctggatatttattgggatttgggtttgactcttgacaac |
24970496 |
T |
|
| Q |
100 |
gaaaacacttgtctttgctcgcaaagttcatgaaatcacacctatatgcatagaaaattcatgaagnnnnnnnnnnnnnnnnnnnnnntacttgtaatag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24970497 |
gaaaacacttgtctttgctcgcaaagttcatgaaatcacacctatatgcatagaaaattcatgaaggaaagaaaaagaagaaaaaaaatacttgtaatag |
24970596 |
T |
|
| Q |
200 |
ccaattcaatgttttgatttaatagaccttgcttaatgtgagaaatcaatacatgtaaagtagcattggaagcaagtcttatgatggtgaaaagagaaag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
24970597 |
ccaattcaatgttttgatttaatagaccttgcttaatgtgagaaattaatacatgtaaagtagcatcggaagcaagttttatgatggtgaaaagagaaag |
24970696 |
T |
|
| Q |
300 |
acttacttaggacagctccaatcacccggatgtttcttgggccttggctcaggacacttgaaacacttgacattactagcaaagttcatgaacccacacc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24970697 |
acttacttaggacagctccaatcacccggatgtttcttgggccttggctcaggacacttgaaacacttgacattactagcaaagttcatgaacccacacc |
24970796 |
T |
|
| Q |
400 |
tacatacataggaaaattaacgacactttaactaacaactgaagtcgatgtctgtattttgattctatacaatataccatacagtgtactgctacaatgt |
499 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24970797 |
tacatacatgggaaaattaacgacactttaactaacaactgaagtcgatgtctgtattttgattctatacaatataccatacagtgtactgctacaatgt |
24970896 |
T |
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| Q |
500 |
tactaatcatcataatgtagcataaattttg |
530 |
Q |
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|||||||||||||||||||| |||||||||| |
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| T |
24970897 |
tactaatcatcataatgtagtataaattttg |
24970927 |
T |
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