View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_low_5 (Length: 524)
Name: NF18536_low_5
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_5 |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 310 - 505
Target Start/End: Complemental strand, 36200651 - 36200456
Alignment:
| Q |
310 |
taatacctgattagcaaacccgataccaaacccgagcaagatccgacccacgatcaacatccaaacatgattagcaaagccattaataagagcaccgaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36200651 |
taatacctgattagcaaacccgataccaaacccgagcaagatccgacccacgatcaacatccaaacatgattagcaaagccattaataagagcaccgaca |
36200552 |
T |
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| Q |
410 |
aggaaaagtaatcctccgaaaagcatggaaagtttccgaccaaacctacgagttatggtggaagctaccaacgaggacaaaagggcagccagatac |
505 |
Q |
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| T |
36200551 |
aggaaaagtaatcctccgaaaagcatggaaagtttccgaccaaacctacgagttatggtggaagctaccaacgaggacaaaagggcagccagatac |
36200456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 36200936 - 36200737
Alignment:
| Q |
13 |
cacagacaaatttaaggacaacaaacatacttttcataatatttttgacaaagacgttatttttcattattttagaggattattttnnnnnnnnnnnnnn |
112 |
Q |
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| T |
36200936 |
cacagacaaatttaaggacaacaaacatacttttcataatacttttgacaaagacgtaatttttcattattttagaggattattttaaaaaaagtaaaaa |
36200837 |
T |
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| Q |
113 |
ncgttaatgaaggaataaattaatgtacaataaaaggtgagataagat-aaatcagataatattaaacacaaacccataatttacgtta-tgtttcccat |
210 |
Q |
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| T |
36200836 |
ccgttaatgaaggaataaattaatgtacaataaaaggcgagataagataaaatcagataatattaaacacaaacccataatttacgttattgtttcccat |
36200737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 459
Target Start/End: Original strand, 35924335 - 35924482
Alignment:
| Q |
312 |
atacctgattagcaaacccgataccaaacccgagcaagatccgacccacgatcaacatccaaacatgattagcaaagccattaataagagcaccgacaag |
411 |
Q |
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|||||||||||||||| || |||||||| || || || |||||||| ||||||||||||||||| || | || |||||||||| ||| ||||| | || |
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| T |
35924335 |
atacctgattagcaaatccaataccaaatcctagtaatatccgaccaacgatcaacatccaaacgtgttgggcgaagccattaacaagggcaccaatgag |
35924434 |
T |
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| Q |
412 |
gaaaagtaatcctccgaaaagcatggaaagtttccgaccaaacctacg |
459 |
Q |
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| T |
35924435 |
gaacaataaacctccaaaaaacatggaaagtttccgaccaaacctacg |
35924482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 311 - 505
Target Start/End: Original strand, 17996 - 18190
Alignment:
| Q |
311 |
aatacctgattagcaaacccgataccaaacccgagcaagatccgacccacgatcaacatccaaacatgattagcaaagccattaataagagcaccgacaa |
410 |
Q |
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||||||||||| ||||||||||||||||| || || ||||||||||| | |||||||||||||||||| | ||||||||||||||| || || |||| | |
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| T |
17996 |
aatacctgattcgcaaacccgataccaaaaccaagaaagatccgaccaaggatcaacatccaaacatgttgagcaaagccattaatgagggctccgatga |
18095 |
T |
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| Q |
411 |
ggaaaagtaatcctccgaaaagcatggaaagtttccgaccaaacctacgagttatggtggaagctaccaacgaggacaaaagggcagccagatac |
505 |
Q |
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||||||| | ||||| |||||||| |||||||||||||||||| ||||||| | ||||||||| ||||| || ||||| || || ||||||||| |
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| T |
18096 |
ggaaaagcagacctccaaaaagcattgaaagtttccgaccaaacttacgagtcacggtggaagccaccaatgacgacaacagcgctgccagatac |
18190 |
T |
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