View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_low_6 (Length: 491)
Name: NF18536_low_6
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 17 - 479
Target Start/End: Complemental strand, 29319976 - 29319513
Alignment:
| Q |
17 |
acttacaataagataattggtttttcagcatgaaaagcagaagttacagaccgaagctattgataccctgaaaacgtttgcagttttaatgccggtatac |
116 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29319976 |
acttacaataagctaattggtttttcagcatgaaaagcagaagttacagaccgaagctattgataccctaaaaacgtttgcagttttaatgccggtatac |
29319877 |
T |
|
| Q |
117 |
atta-acatctgaaatctaggaatgatgtaggtttttattatggtaaataattatcctcatgtgatttgatgtataattgtttcatgcagggaaattttc |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319876 |
attatacatctgaaatctaggaatgatgtaggtttttattatggtaaataattatcctcatgtgatttgatgtataattgtttcatgcagggaaattttc |
29319777 |
T |
|
| Q |
216 |
gccaaaactattacgatacaacgatggaagcacttaaagtccttgtgtttgataagagcagtttacccaaactggtgctctgtgctaaatgtctagaatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319776 |
gccaaaactattacgatacaacgatggaagcacttaaagtccttgtgtttgataagagcagtttacccaaactggtgctctgtgctaaatgtctagaatt |
29319677 |
T |
|
| Q |
316 |
catgatatatcttgttagggaaattgggccagataatttcgaagagcaggaagctgttcaggttagtatttctcctaattctttgagttgactcaaatta |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319676 |
catgatatatcttgttagggaaattgggccagataatttcgaagagcaggaagctgttcaggttagtatttctcctaattctttgagttgactcaaatta |
29319577 |
T |
|
| Q |
416 |
tatatgatgtattattgaaaccgaagttaaaattgagataagtagaaaaatatttaattatttt |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29319576 |
tatatgatgtattattgaaaccgaagttaaaattgagataagtagaaaaatatttaattatttt |
29319513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 38 - 463
Target Start/End: Complemental strand, 29302321 - 29301898
Alignment:
| Q |
38 |
ttttcagcatgaaaagcagaagttacagaccgaagctattgataccctgaaaacgtttgcagttttaatgccggtatacattaacatctgaaatctagga |
137 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||| |||||||| | || | ||||||| ||||||| |
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| T |
29302321 |
ttttcagcatgaaaagcagaagatacaggttgaagctatcgataccctgaaatcgtttgcagttttaacgccggtatgcgttgatatctgaagtctagga |
29302222 |
T |
|
| Q |
138 |
atgatgtaggtttttattatggtaaataattatcctcatgtgatttgatgtataattgtttcatgcagggaaattttcgccaaaactattacgatacaac |
237 |
Q |
| |
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| || | |||||| ||| |||| |||||||||| |||||| || |||||||| |||||||| || |||||||||||| |||||||| ||||| |
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| T |
29302221 |
aagacgccggttttgatttctgtaattaattatcctaatgtgaattt-----taattgttgcatgcaggaaacttttcgccaaaattattacgaaacaac |
29302127 |
T |
|
| Q |
238 |
gatggaagcacttaaagtccttgtgtttgataagagcagtttacccaaactggtgctctgtgctaaatgtctagaattcatgatatatcttgttagggaa |
337 |
Q |
| |
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| |||||||||| |||||| ||||||||||| || |||||||| || | || ||| ||| ||||||||||||| |||| |||||||||||||| || |
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| T |
29302126 |
ggtggaagcactgaaagtcattgtgtttgatgagcatagtttacctggaccgttgatctctgcaaaatgtctagaatgcatggtatatcttgttaggaaa |
29302027 |
T |
|
| Q |
338 |
attgggccagataatttcgaagagcaggaagctgttcaggttagtatttctcctaattc---tttgagttgactcaaattatatatgatgtattattgaa |
434 |
Q |
| |
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|||||||||||||||| ||||||||||||||| || ||| |||| |||| ||||||| ||||| ||||||||||||||||| |||| ||| |||| |
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| T |
29302026 |
gttgggccagataattttaaagagcaggaagctgatctggtgagtacttctgctaattctgttttgaattgactcaaattatatagaatgtgttactgaa |
29301927 |
T |
|
| Q |
435 |
accgaagttaaaattgagataagtagaaa |
463 |
Q |
| |
|
||| | ||||||||||||||||||||||| |
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| T |
29301926 |
accaatgttaaaattgagataagtagaaa |
29301898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 69 - 463
Target Start/End: Complemental strand, 29330967 - 29330570
Alignment:
| Q |
69 |
gaagctattgataccctgaaaacgtttgcagttttaatgccggtatacattaacatctgaaatctaggaatgatgtaggtttttattatggtaaataatt |
168 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||| |||| |||| ||||||| || |||||||| |||||||| || | |||||||||| |
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| T |
29330967 |
gaagctattgataccctgaaatcgtttgcagtttcaatgcaggtacttgttaatatctgaagtccaggaatgacataggttttgatcacagtaaataatt |
29330868 |
T |
|
| Q |
169 |
atcctcatgtgatttgatgtataattgtttcatgcagggaaattttcgccaaaactattacgatacaacgatggaagcacttaaagtccttgtgtttgat |
268 |
Q |
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|| || |||||||||||||| |||||||| |||||||| || |||||||||||| ||||||||||||| ||||||||| | |||| || ||| || |
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| T |
29330867 |
attctaatgtgatttgatgtctaattgttgcatgcaggaaatttttcgccaaaatcattacgatacaacaatggaagcattgaaagctattttgtccaat |
29330768 |
T |
|
| Q |
269 |
aagagcagtttacccaaactggtgctctgtgctaaatgtctagaattcatgatatatcttgttagggaaattgggccagataatttcgaagagcaggaag |
368 |
Q |
| |
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||| |||||||||||| || |||||||||| ||||||| ||||| |||| | |||||||||||| || ||||||||||| ||||| |||||||||||| |
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| T |
29330767 |
aagtatagtttacccaaattgttgctctgtgccaaatgtcaagaatgcatggtttatcttgttaggaaagttgggccagatgatttcaaagagcaggaag |
29330668 |
T |
|
| Q |
369 |
ctgttcaggttagtatttctcctaattc---tttgagttgactcaaattatatatgatgtattattgaaaccgaagttaaaattgagataagtagaaa |
463 |
Q |
| |
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|||||||||| ||||||||| ||||||| ||||| ||||||||||||||||| |||| ||||||||| | ||||||| |||||| ||||||| |
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| T |
29330667 |
ctgttcaggtgagtatttcttctaattcttttttgaattgactcaaattatatagagtgtaaaattgaaaccatatttaaaatagagatatgtagaaa |
29330570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 378
Target Start/End: Original strand, 42284480 - 42284583
Alignment:
| Q |
275 |
agtttacccaaactggtgctctgtgctaaatgtctagaattcatgatatatcttgttagggaaattgggccagataatttcgaagagcaggaagctgttc |
374 |
Q |
| |
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|||||||||||| || || ||||||| ||||||| ||||| |||| | |||||||||||| || ||||||||||| ||||| |||||| ||||||||||| |
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| T |
42284480 |
agtttacccaaattgttgatctgtgccaaatgtcaagaatgcatggtttatcttgttaggaaagttgggccagatgatttcaaagagcgggaagctgttc |
42284579 |
T |
|
| Q |
375 |
aggt |
378 |
Q |
| |
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|||| |
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|
| T |
42284580 |
aggt |
42284583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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