View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_low_8 (Length: 433)
Name: NF18536_low_8
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 3009664 - 3010073
Alignment:
| Q |
18 |
cttaaggtttctgaaaattcatatgcaacatagttgattgatatgttagcttaaccaccaagttattaaattgcagttacatacttacagtcatggttgc |
117 |
Q |
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| T |
3009664 |
cttaaggtttctgaaaattcatatgcaacatagttgattgatatgttagcttaaccaccaagttattaaattgcagttacatacttacagtcatggttgc |
3009763 |
T |
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| Q |
118 |
atctcaagctcttgttaagaatagatatgaagccatgcttagttatgaacatattttaatgaatatctttgaataattagnnnnnnnnacctgtctaaac |
217 |
Q |
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| T |
3009764 |
atctcaagctcttgttaagaatagatatgaagccatgcttagttatgaacatattttaatgaatatctttgaataattagttttttttacctgtctaaac |
3009863 |
T |
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| Q |
218 |
taccaaaatatgatttgttgcagggtttgaaggatagtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagaccacagt |
317 |
Q |
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| T |
3009864 |
taccaaaatatgatttgttgcagggtttgaaggatagtggaattggttctcaaggaatcacaaacagtattaacatgatgaccaagattaagaccacagt |
3009963 |
T |
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| Q |
318 |
aatcaacttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttccacttt |
417 |
Q |
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| T |
3009964 |
aatcaacttaccaacaccttcttatacaatgggataagatgcttaataaatagttagtcatagtaacaattttcatattgatgtgatatgcttccacttt |
3010063 |
T |
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| Q |
418 |
cctatgcttc |
427 |
Q |
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| T |
3010064 |
cctatgcttc |
3010073 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 350
Target Start/End: Complemental strand, 54724744 - 54724647
Alignment:
| Q |
253 |
agtggaattggttctcaaggaatcaccaacagtattaacatgatgaccaagattaagaccacagtaatcaacttaccaacaccttcttatacaatggg |
350 |
Q |
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||||||||||| || |||||||| |||||||| || ||||||||||| || || || || || || || ||||| |||| ||||||||||| ||||| |
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| T |
54724744 |
agtggaattggatcacaaggaattaccaacagcataaacatgatgacaaaaatcaaaactaccgtgataaacttgccaagcccttcttataccatggg |
54724647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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