View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18536_low_9 (Length: 363)
Name: NF18536_low_9
Description: NF18536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18536_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 223 - 361
Target Start/End: Complemental strand, 9719057 - 9718921
Alignment:
| Q |
223 |
ctatgtttgttagtgcaaacaattttgtgtttctcattattgtactcaattcttactacttt-gagttatcaatttgggtccactggaatcatgcaagat |
321 |
Q |
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| T |
9719057 |
ctatgtttgttagggcaaagaattttgtctttctcatt---gtactcaattcttactacttccgagttatcaatttgggtccactgcaatcatgaaagaa |
9718961 |
T |
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| Q |
322 |
tttgagtcaaaatattacaacttttctgaaagtttctgat |
361 |
Q |
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| T |
9718960 |
tttgagtcacaaaattacaacttttcataaagtttgtgat |
9718921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 9719184 - 9719063
Alignment:
| Q |
68 |
agttgtatatatagttacacacatgataatttcttcagcaaannnnnnnnattaaaaaataac--atttgttaaaaata-tcaaagacagcaacacatgc |
164 |
Q |
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| T |
9719184 |
agttgtatgtatagttagacacatgataatttcctcaacaaattttatttattaaaaaataaacaatttgttaaaaataataaaagacagcaacacatgc |
9719085 |
T |
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| Q |
165 |
aaaaagattgatttcaatcaca |
186 |
Q |
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|||||||||||| ||||||||| |
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| T |
9719084 |
aaaaagattgatatcaatcaca |
9719063 |
T |
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