View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_high_20 (Length: 361)
Name: NF18537_high_20
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 10972446 - 10972100
Alignment:
| Q |
1 |
cccttgagttggttatgaacgactttaaagtattctcgaaaattaaacaccactctttgtggagttgattctattttagtatgtcgttgactcggatacg |
100 |
Q |
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| T |
10972446 |
cccttgagcttgttatggacgactttaaagtattctcaaaaattaaacaccactctttgtggagttgattctattttagcatgtcgttgactcggatacg |
10972347 |
T |
|
| Q |
101 |
gatggtagtaaatgtaatcaagttatcgctctatcactttgtgaagtagggaaaagcctacaacttacggcgtcgtttgcgacaattatttttaaaggtg |
200 |
Q |
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| T |
10972346 |
gatggtagtaaatgtaatcaagttatcgctctatcactttgtgaaatagggaaaaacctacaacttacggcgtcgtttgcgacaatt-tttttaaaggtg |
10972248 |
T |
|
| Q |
201 |
tcacaatattcaaggaaaatagcaagatgaagatttgggtcatccgttggtacacnnnnnnnttgattttgttgcgccatgaatgggaaatatggtttta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10972247 |
tcacaatattcaaggaaaatagcaagatgaagatttgggtcatccgttggtacacaaaaaaattgattttgttgcgccatgaatgggaaatatggtttta |
10972148 |
T |
|
| Q |
301 |
attcaaaattgttagcctccaccgtaggaggcatgatagttgaatgtg |
348 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10972147 |
attcaaaattgttagcctccaccgtaggacgcatgatagttgaatgtg |
10972100 |
T |
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