View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18537_high_3 (Length: 669)

Name: NF18537_high_3
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18537_high_3
NF18537_high_3
[»] chr5 (1 HSPs)
chr5 (19-659)||(3004394-3005041)
[»] chr4 (4 HSPs)
chr4 (283-659)||(54654663-54655040)
chr4 (19-231)||(54654441-54654664)
chr4 (340-476)||(1065539-1065672)
chr4 (237-303)||(42094340-42094406)
[»] chr3 (5 HSPs)
chr3 (235-540)||(51648950-51649252)
chr3 (235-301)||(8505207-8505273)
chr3 (269-325)||(4866114-4866170)
chr3 (269-325)||(55039881-55039937)
chr3 (118-158)||(49879762-49879802)
[»] chr1 (5 HSPs)
chr1 (237-540)||(20604307-20604611)
chr1 (465-540)||(29310805-29310880)
chr1 (242-325)||(35164380-35164463)
chr1 (269-325)||(30402649-30402705)
chr1 (269-325)||(30409206-30409262)
[»] chr8 (4 HSPs)
chr8 (235-540)||(30847932-30848233)
chr8 (269-325)||(11144349-11144405)
chr8 (242-325)||(1660597-1660680)
chr8 (242-306)||(1599698-1599762)
[»] scaffold0390 (1 HSPs)
scaffold0390 (339-481)||(984-1123)
[»] chr2 (1 HSPs)
chr2 (339-481)||(22140157-22140296)
[»] scaffold0786 (1 HSPs)
scaffold0786 (339-481)||(2452-2591)
[»] chr6 (3 HSPs)
chr6 (40-167)||(6666936-6667074)
chr6 (22-88)||(6781261-6781329)
chr6 (459-498)||(31449287-31449326)
[»] chr7 (1 HSPs)
chr7 (269-325)||(13949966-13950022)


Alignment Details
Target: chr5 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 19 - 659
Target Start/End: Original strand, 3004394 - 3005041
Alignment:
Q  19 atagagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatgatgtt-ccttgattgaattgttatcaaataact 115  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3004394 atagagcacaaacaagatgggattgaattcaaccaggacgggacagatgctgatcaagtaaatgatgatgtttccttgattgaattgttatcaaataact 3004493  T
Q  116 acacatattagaagtctgaaaaagcaatctgttcaggttagtattccaccttgctgaaaatttatgttgtgttttcaattatcttgatctgtttaggcat 215  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3004494 aaacatattagaagtctgaaaaagcaatctgttcaggttagtattccaccttactgaaaatttatgttgtgttttcaattatcttgatctgtttaggcat 3004593  T
Q  216 tgccccttcttcatcacattctgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagtttt 315  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3004594 tgccccttcttcatcacattctgttctacatgtattatgtctcccattttcatattatatcaagttgcaagtaatatgaattgagttttaagatagtttt 3004693  T
Q  316 ctttgactgcgatattgcattaagagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004694 ctttgactgcgatattgcattaagagaacattgtttgccgatttaatcctatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactt 3004793  T
Q  416 tatgtgatgacgatgatgtacatat-ctaataaatattgggagatggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaac 514  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3004794 tatgtgatgacgatgatgtacatatcctaataaatattgggaggtggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaac 3004893  T
Q  515 ttattcagaagacaatggaatagaaagttgtctgtggtt---agtgagacgaaagctttaaggttgtgactggtgcggttttcagacaacagactgatgt 611  Q
    ||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3004894 ttattcaaaagacaatggaatagaaagttgtctgtggttataagtgagacgaaagctttaaggttgtgactggtgcggttttcggacaacagactgatgt 3004993  T
Q  612 ggttcaactgtgttggcagtggtgatgtgttgcggtttgctacctatg 659  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3004994 ggttcaactgtgttggcagtggtgatgtgctgcggtttgctacctatg 3005041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 283 - 659
Target Start/End: Original strand, 54654663 - 54655040
Alignment:
Q  283 caagtaatatgaattgagttttaagatagttttctttgactgcgatattgcattaagagaacattgtttgccgatttaatcccatctgaaagaaagaagt 382  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||||||||    
T  54654663 caagtaatatgaattgagttttaagatagttttctttgactacgatattgtatcaagagaacattgtttgtcgatttaatcccatctgaaagaaagaagt 54654762  T
Q  383 gtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacatatc-taataaatattgggagatggtcctttggagatgctaattt 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  54654763 gtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacatatcctaataaatattgggaggtggtcctttggagatgctaattt 54654862  T
Q  482 tatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaagttgtctgtggttagtgagacgaaagctttaaggttgtgac 581  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  54654863 tataaaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatacaaagctgtctgtggttagtgagacgaaagctttaaggttgtgac 54654962  T
Q  582 tggtgcggttttcagacaacagactgatgtggttcaactgtgttggcagtggtgatgtgttgcggtttgctacctatg 659  Q
    | |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54654963 tagtgcggttttcagacagcagactgttgtggttcaactgtgttggcagtggtgatgtgctgcggtttgctacctatg 54655040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 54654441 - 54654664
Alignment:
Q  19 atagagcacaaacaagatgggattgaattcaaccaggagg--acagatgccgatcaagtaaatgatgatgtt-ccttgattgaattgtt--------atc 107  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||  |||||||||||| ||||||||||||||||        ||     
T  54654441 atagagcacaaacaagatgggattgaattcaaccaggaggggacagatgctgatcaagacaatgatgatgtttccttgattgaattgttcacacatgatt 54654540  T
Q  108 aaataactacacatattagaagtctgaaaaagcaatctgttcaggttagtattccaccttgctgaaaatttatgttgtgttttcaattatcttgatctgt 207  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||    
T  54654541 aaataactgaacatattagaagtctgaaaaagcaatctgttcaggttagtattcctccttcctgaaaatttatgttgtgttttcaattatcttgatctgt 54654640  T
Q  208 ttaggcattgccccttcttcatca 231  Q
    |||||| |||||||||||||||||    
T  54654641 ttaggccttgccccttcttcatca 54654664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 340 - 476
Target Start/End: Complemental strand, 1065672 - 1065539
Alignment:
Q  340 agaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacata 439  Q
    |||||| ||||||||||||| |||||||||     |||||||||||||  |||||||| |||||||||||||| ||| |||||||| ||  || ||||||    
T  1065672 agaacaatgtttgccgatttgatcccatct----aaaagaagtgtctctttgggatatgaaatcaatatactattttttgtgatgatgactatatacata 1065577  T
Q  440 t-ctaataaatattgggagatggtcctttggagatgct 476  Q
    | ||||| |||||| |||| ||||| | ||||||||||    
T  1065576 tcctaattaatatttggaggtggtcttgtggagatgct 1065539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 237 - 303
Target Start/End: Complemental strand, 42094406 - 42094340
Alignment:
Q  237 tgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttt 303  Q
    |||| ||||||||| |||||| ||||||||||||||| |||||||||||||||| | ||||||||||    
T  42094406 tgttctacatgtataatgtcttccattttcatattatttcaagttgcaagtaatttaaattgagttt 42094340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 235 - 540
Target Start/End: Original strand, 51648950 - 51649252
Alignment:
Q  235 tctgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgcgatattgca 334  Q
    |||||| ||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  51648950 tctgttctacatgtattatgtctcccattttcatacgatttcaagttgcaagtaatatgaattgagttttaagatggttttctttgactgcaaaattgca 51649049  T
Q  335 ttaagagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatg---a 431  Q
    || |||||||||||||||||||||| |||||||||    |||||||||||||||||||||||||||||||||||||||   |||||||||| ||||   |    
T  51649050 tttagagaacattgtttgccgatttgatcccatct----gaaagaagtgtctccatgggatatcaaatcaatatacta---tatgtgatgatgatgatca 51649142  T
Q  432 tgtacatat-ctaataaatattgggagatggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaat 530  Q
    ||||||||| ||||| ||||||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  51649143 tgtacatatcctaattaatatttagaggtggtcctttggagatgcaaattttatagaaaattatgtttttgtttcaggtaaaacttatttagaagacaat 51649242  T
Q  531 ggaatagaaa 540  Q
    |  |||||||    
T  51649243 gacatagaaa 51649252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 8505273 - 8505207
Alignment:
Q  235 tctgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagt 301  Q
    |||||| || ||||||||||||||| |||||||||  || |||||||||||||||||||||||||||    
T  8505273 tctgttctatatgtattatgtctcctattttcatacgatttcaagttgcaagtaatatgaattgagt 8505207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 4866114 - 4866170
Alignment:
Q  269 attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc 325  Q
    ||||| |||| ||||||||||| | |||||||||||||| |||||||||||||||||    
T  4866114 attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc 4866170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 55039937 - 55039881
Alignment:
Q  269 attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc 325  Q
    ||||| |||| ||||||||||| | |||||||||||||| |||||||||||||||||    
T  55039937 attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc 55039881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 49879762 - 49879802
Alignment:
Q  118 acatattagaagtctgaaaaagcaatctgttcaggttagta 158  Q
    ||||||||| ||||||| |||| ||||||||||||||||||    
T  49879762 acatattagtagtctgagaaaggaatctgttcaggttagta 49879802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 237 - 540
Target Start/End: Original strand, 20604307 - 20604611
Alignment:
Q  237 tgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgcgatattgcatt 336  Q
    |||| ||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  20604307 tgttctacatgtattatgtctcccattttcatacgatttcaagttgcaagtaatatgaattgagttttaagatggttttctttgactgcaaaattgcatt 20604406  T
Q  337 aagagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatg------ 430  Q
     ||||||||||||||| |||||| |||||||||    |||||||| ||||||||||||||||||||||||||||||   |||||||||| ||||          
T  20604407 tagagaacattgtttgtcgatttgatcccatct----gaaagaagcgtctccatgggatatcaaatcaatatacta---tatgtgatgatgatgatcatg 20604499  T
Q  431 -atgtacatat-ctaataaatattgggagatggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagaca 528  Q
     |||||||||| ||||| ||||||  ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20604500 catgtacatatcctaattaatatttagaggtggtcctttggagatgcaaattttatagaaaattatgtttttgtttcaggtaaaacttatttagaagaca 20604599  T
Q  529 atggaatagaaa 540  Q
    |||| |||||||    
T  20604600 atggcatagaaa 20604611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 465 - 540
Target Start/End: Original strand, 29310805 - 29310880
Alignment:
Q  465 tttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaatggaatagaaa 540  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  29310805 tttggagatgcaaattttatagaaaattatgtttttgtttcaggtaaaacttatttaaaagacaatggaatagaaa 29310880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 242 - 325
Target Start/End: Original strand, 35164380 - 35164463
Alignment:
Q  242 tacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc 325  Q
    ||||||||| |||| | |||| |||  ||||| |||| ||||||||||| | |||||||||||||| |||||||||||||||||    
T  35164380 tacatgtataatgttttccatattcgaattatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc 35164463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 30402705 - 30402649
Alignment:
Q  269 attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc 325  Q
    ||||| |||| ||||||||||| | |||||||||||||| |||||||||||||||||    
T  30402705 attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc 30402649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 30409262 - 30409206
Alignment:
Q  269 attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc 325  Q
    ||||| |||| ||||||||||| | |||||||||||||| |||||||||||||||||    
T  30409262 attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc 30409206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 3e-90; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 235 - 540
Target Start/End: Complemental strand, 30848233 - 30847932
Alignment:
Q  235 tctgttttacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgcgatattgca 334  Q
    |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||    
T  30848233 tctgttctacatgtattatgtctcccattttcatatgatttcaagttgcaagtaatatgaattgagttttaagatggttttctttgactgcaaaattgca 30848134  T
Q  335 ttaagagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatg---acgatga 431  Q
     | |||||||||||||||||||||| |||||||||     |||||||||||||||  |||||||||||||||||||||   |||||||||   | |||||    
T  30848133 attagagaacattgtttgccgatttgatcccatct----aaaagaagtgtctccacaggatatcaaatcaatatacta---tatgtgatgattatgatga 30848041  T
Q  432 tgtacatat-ctaataaatattgggagatggtcctttggagatgctaattttatagaaaattatgtttttgtttcaggtaaaacttattcagaagacaat 530  Q
    ||||||||| ||||| ||| || |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  30848040 tgtacatatcctaattaatttttggaggtggtcctttggaga-gcaaattttatagaaaattatgtttttgtttcaggtaaaactaatttagaagacaat 30847942  T
Q  531 ggaatagaaa 540  Q
    ||||||||||    
T  30847941 ggaatagaaa 30847932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 11144349 - 11144405
Alignment:
Q  269 attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc 325  Q
    ||||| |||| ||||||||||| | |||||||||||||| |||||||||||||||||    
T  11144349 attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc 11144405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 1660680 - 1660597
Alignment:
Q  242 tacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc 325  Q
    ||||||||| |||| | |||| |||  ||||| | || ||||||||||| | |||||||||||||| |||||||||||||||||    
T  1660680 tacatgtataatgttttccatattcgaattattttaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc 1660597  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 1599762 - 1599698
Alignment:
Q  242 tacatgtattatgtctcccattttcatattatctcaagttgcaagtaatatgaattgagttttaa 306  Q
    ||||||||| |||||| |||| |||  ||||| |||| ||||||||||| | |||||||||||||    
T  1599762 tacatgtataatgtcttccatattcgaattatttcaaattgcaagtaatttaaattgagttttaa 1599698  T

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Target: scaffold0390 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0390
Description:

Target: scaffold0390; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 339 - 481
Target Start/End: Original strand, 984 - 1123
Alignment:
Q  339 gagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacat 438  Q
    ||||||| ||||||||||||| |||||||||||||    ||||||||||  |||||||| |||||||||||| ||||| |||||||| ||  || |||||    
T  984 gagaacaatgtttgccgatttgatcccatctgaaa----gaagtgtctctttgggatatgaaatcaatatacaactttttgtgatgatgactatatacat 1079  T
Q  439 at-ctaataaatattgggagatggtcctttggagatgctaattt 481  Q
    || ||||| |||||| |||| |||||||||||||||||| ||||    
T  1080 atcctaattaatatttggaggtggtcctttggagatgcttattt 1123  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 339 - 481
Target Start/End: Complemental strand, 22140296 - 22140157
Alignment:
Q  339 gagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacat 438  Q
    ||||||| ||||||||||||| ||||||||     ||||||||||||||  |||||||| |||||||||||| ||||| |||||||| ||  || |||||    
T  22140296 gagaacaatgtttgccgatttgatcccatc----cgaaagaagtgtctctttgggatatgaaatcaatatacaactttttgtgatgatgactatatacat 22140201  T
Q  439 at-ctaataaatattgggagatggtcctttggagatgctaattt 481  Q
    || ||||| |||||| |||| |||||||||||||||||| ||||    
T  22140200 atcctaattaatatttggaggtggtcctttggagatgcttattt 22140157  T

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Target: scaffold0786 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0786
Description:

Target: scaffold0786; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 339 - 481
Target Start/End: Original strand, 2452 - 2591
Alignment:
Q  339 gagaacattgtttgccgatttaatcccatctgaaagaaagaagtgtctccatgggatatcaaatcaatatactactttatgtgatgacgatgatgtacat 438  Q
    ||||||| ||||| ||||||| |||||||||||||    ||||||||||  |||||||| |||||||||||| ||||| |||||||| ||  || |||||    
T  2452 gagaacaatgttttccgatttgatcccatctgaaa----gaagtgtctcattgggatatgaaatcaatatacaactttttgtgatgatgactatatacat 2547  T
Q  439 at-ctaataaatattgggagatggtcctttggagatgctaattt 481  Q
    || ||||| ||| || |||| |||||||||||||||||| ||||    
T  2548 atcctaattaatctttggaggtggtcctttggagatgcttattt 2591  T

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Target: chr6 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 40 - 167
Target Start/End: Original strand, 6666936 - 6667074
Alignment:
Q  40 attgaattcaaccaggagg--acagatgccgatcaagtaaatgatgatgtt-ccttgattgaattgtt--------atcaaataactacacatattagaa 128  Q
    |||| ||||||||||||||  ||||||||||||||||| |||||||||||| ||||||||||  ||||        ||||||||||   |||||||| ||    
T  6666936 attggattcaaccaggaggggacagatgccgatcaagttaatgatgatgtttccttgattgatatgttcacacatgatcaaataaccgaacatattacaa 6667035  T
Q  129 gtctgaaaaagcaatctgttcaggttagtattccacctt 167  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  6667036 gtctgaaaaagcaatctgttcaggttagtacaccacctt 6667074  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 6781329 - 6781261
Alignment:
Q  22 gagcacaaacaagatgggattgaattcaaccagga--ggacagatgccgatcaagtaaatgatgatgtt 88  Q
    ||||||||||||||||| |||||||||||||||||  |||||||||| |||||||||||||||| ||||    
T  6781329 gagcacaaacaagatggaattgaattcaaccaggaggggacagatgctgatcaagtaaatgatgctgtt 6781261  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 459 - 498
Target Start/End: Original strand, 31449287 - 31449326
Alignment:
Q  459 tggtcctttggagatgctaattttatagaaaattatgttt 498  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31449287 tggtcctttggagatgctaattttatagaaaattatgttt 31449326  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 325
Target Start/End: Original strand, 13949966 - 13950022
Alignment:
Q  269 attatctcaagttgcaagtaatatgaattgagttttaagatagttttctttgactgc 325  Q
    ||||| |||| ||||||||||| | |||||||||||||| |||||||||||||||||    
T  13949966 attatttcaaattgcaagtaatttaaattgagttttaaggtagttttctttgactgc 13950022  T

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