View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_high_30 (Length: 305)
Name: NF18537_high_30
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_high_30 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 66 - 289
Target Start/End: Complemental strand, 33705800 - 33705568
Alignment:
| Q |
66 |
atgaattaatgaaaagattaaaaggaagaaattaaagagccccttgagaatggagtgattgaatgtttcttaagaggaagttgagatatttggatcttcc |
165 |
Q |
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| T |
33705800 |
atgaattaatgaaaagattaaaaggaagaaa----agagccccttgagaatggagtaattgaatgtttcttaagaggaagttgagatatttggatcttcc |
33705705 |
T |
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| Q |
166 |
attacctttgtatgttccaggttctatgactttcaaagttgtaaagaagagcaaatcaaaattctctgcaacatgacatataaaa-------------ca |
252 |
Q |
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| T |
33705704 |
aattcctttgtatgttccaggttctattactttcaaagttgtaaagaatagcaaatcaaaattctcagcaacatgacatataaaatagctagatacatga |
33705605 |
T |
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| Q |
253 |
gcagaaggaagaacaatatatataaaatagtttggtt |
289 |
Q |
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| T |
33705604 |
gcagaaggaagaacaatatatataaaatagtttggtt |
33705568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33706286 - 33706215
Alignment:
| Q |
1 |
gtcaagtaattgtataagtatacgttacacgttggttacatgcattaagtatcaactagtttataatgaattaa |
74 |
Q |
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| T |
33706286 |
gtcaaataattgtataagta--cgttatacgttggttacatgcattaagtatcaactagtttataatgaattaa |
33706215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 80
Target Start/End: Complemental strand, 33697462 - 33697390
Alignment:
| Q |
6 |
gtaattgtataagtatacgttacacgttggttacatgcattaagtatcaactagtttataatgaattaatgaaaa |
80 |
Q |
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| T |
33697462 |
gtaattgtataagtaa--gttacacgttggttatgtgcatcaagtatcaactagtttataatgaatcaatgaaaa |
33697390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 33676575 - 33676485
Alignment:
| Q |
4 |
aagtaattgtataagtatacgttacacgttggttacatgcattaagtatcaactagtttataatgaattaatgaaaagattaaaaggaagaaa |
96 |
Q |
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| T |
33676575 |
aagtaattgtatatgta--cgttacacgttggttacgtgcaacaagtatcaacaagtttaaaatgaatcaatcaaaacattgagaggaagaaa |
33676485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 33667991 - 33667939
Alignment:
| Q |
4 |
aagtaattgtataagtatacgttacacgttggttacatgcattaagtatcaacta |
58 |
Q |
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| T |
33667991 |
aagtaattgtatatgta--cgttacacgttggttacgtgcaataagtatcaacta |
33667939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 33138 - 33217
Alignment:
| Q |
110 |
tgagaatggagtgattgaatgtttcttaagaggaagttgagata--tttggatcttccattacctttgtatgttccaggt |
187 |
Q |
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| T |
33138 |
tgagaatggagtgattgaatggttcttaagaggaagttgaggtaactttagatcttccattacctttgtatgtttcaggt |
33217 |
T |
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