View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18537_high_36 (Length: 250)
Name: NF18537_high_36
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_high_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 49350532 - 49350290
Alignment:
| Q |
1 |
ttaaacattaatgga-ttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatcc |
99 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350532 |
ttaaacattaatggagttgcattaatgaaaatgggggactctgagaatttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatcc |
49350433 |
T |
|
| Q |
100 |
ttcatgaaccataaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcaga |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49350432 |
ttcatgaaccataaaggatgcagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcaga |
49350333 |
T |
|
| Q |
200 |
tacttgtgtgttttaaccttggaggaagtattctacctatgct |
242 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
49350332 |
tacttgtgtgttttaacattggaggaagtattctacctatgct |
49350290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 36663822 - 36663734
Alignment:
| Q |
112 |
aaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
207 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||| ||||||||| ||| ||| |||| || ||||||||||||||| ||||||||| |
|
|
| T |
36663822 |
aaaggaagcagaagctgaggcacttaaagaacccatgt-------caaagattatatcacaacttcagtcttctttagttcaatcaaatacttgtg |
36663734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University