View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_high_39 (Length: 237)
Name: NF18537_high_39
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 51455436 - 51455216
Alignment:
| Q |
1 |
cctcctcgttgatggtttcagccttacgcttcatttcctatagtaaaccaaatggatagatttcaaatatagaatacagaaaaatcagaagaatagttaa |
100 |
Q |
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| T |
51455436 |
cctcctcgttgatggtttcagccttacgcttcatttcctatagtaaaccaaatggatagatttcaaatatagaatacagaaaaatcagaagaatagttaa |
51455337 |
T |
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| Q |
101 |
tcgtggaagggtggatcactaacatcgatgagtttaaaagaccgcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaatat |
200 |
Q |
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| T |
51455336 |
tcgtggaagggtggatcactaacatcgatgagtttaaaagaccgcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaatat |
51455237 |
T |
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| Q |
201 |
cactctctttcagtttaggat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
51455236 |
cactctctttcagtttaggat |
51455216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 30207548 - 30207602
Alignment:
| Q |
144 |
gcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaat |
198 |
Q |
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| T |
30207548 |
gcaagcatgctttgcaattgcaattaccacagcaccctggacatgccttggcaat |
30207602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 51479793 - 51479739
Alignment:
| Q |
143 |
cgcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaa |
197 |
Q |
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| T |
51479793 |
cgcaagcatgctttgcaattgcaattaccacagcacaccggacatgcctcggcaa |
51479739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 51496805 - 51496757
Alignment:
| Q |
143 |
cgcaagcatgctttgcaattgcaattatcacagcacacaggacatgcct |
191 |
Q |
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| T |
51496805 |
cgcaagcaagctttgcaattgcaattaccacagcacactggacatgcct |
51496757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 43160349 - 43160142
Alignment:
| Q |
13 |
tggtttcagccttacgcttcatttcctatagtaaaccaaatggatagatttcaaatatagaatacagaaaaatcagaagaatagttaa--tcgtggaagg |
110 |
Q |
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||||||| ||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||| | | ||||| |
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| T |
43160349 |
tggtttcgaccttatgcttcatttcctatagtaaaccagatggatacatttcaaatatacaatacagaaaaatcataagaatagttaatgtagaagaagg |
43160250 |
T |
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| Q |
111 |
gtggatcactaacatcgatgagtttaaaagaccgcaagcatgctttgcaattgcaattatcacagcacacaggacatgccttggcaatatcactctcttt |
210 |
Q |
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| T |
43160249 |
gaggatcaccgacattaatgagtttagaagatcgtaagcacgctttacaattgcaattattacaacacacaggacatgcctcggcaacatcgctttcttt |
43160150 |
T |
|
| Q |
211 |
cagtttag |
218 |
Q |
| |
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|| ||||| |
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| T |
43160149 |
caatttag |
43160142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 4299405 - 4299358
Alignment:
| Q |
144 |
gcaagcatgctttgcaattgcaattatcacagcacacaggacatgcct |
191 |
Q |
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||||||||||||||||||||| ||| |||||||||| |||||||||| |
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| T |
4299405 |
gcaagcatgctttgcaattgctgttaccacagcacaccggacatgcct |
4299358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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