View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_10 (Length: 433)
Name: NF18537_low_10
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 22078509 - 22078110
Alignment:
| Q |
10 |
ataatactcatttgcattaatttaaaacaactagtgaagacatatttatactataaagacaaatagaaatattgatggatcgtagaacatgagacaagct |
109 |
Q |
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| T |
22078509 |
ataatactcatttgcattaatttaaaacaactggtgaagacatatttatactataaagacaaatagaaatattgatggatcgtagaacatgagacaagct |
22078410 |
T |
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| Q |
110 |
tgacgaataccaagcatatcattcaaatgtagttagttagttaaaagttagcataagactataagttaatgaaacgggacactctttagtctatatacat |
209 |
Q |
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| T |
22078409 |
tgacgaataccaagcatatcattcaaatgtagttaataagctaaaagttagcataagactataagttaatgaaacgggacactctttagtctatacacat |
22078310 |
T |
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| Q |
210 |
ggtgtttcttatatctgggaagataacaaaacatgttcctaatctttacattacagcattatgtacaaaacaaaacatttcaacacaaagatagcatgct |
309 |
Q |
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| T |
22078309 |
ggtgtttcttatatgtgggaagataacaaaacatgttcctaatctttactttacagcattatgtac-aaacaaaacatttcaacacaaagatagcatgct |
22078211 |
T |
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| Q |
310 |
agatcnnnnnnnatatcatgcaacatgagacttttcggtggtg--acatgtaaaggtcaattttccactgcaacatttaaacacaaagaaagcatgctag |
407 |
Q |
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| T |
22078210 |
agatctttttttatatcatgcaacatgagactttccggtggtgacacatgtaaaggtcaattttccacggcaacatttcaacacaaagatagcatgctag |
22078111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 283 - 420
Target Start/End: Complemental strand, 22078139 - 22077999
Alignment:
| Q |
283 |
aacatttcaacacaaagatagcatgctagatcnnnnnnnatatcatgcaacatgagacttttcggtggtgaca--tgtaaaggtcaattttccactgcaa |
380 |
Q |
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| T |
22078139 |
aacatttcaacacaaagatagcatgctagan-tttttttatatcatgcaacatgagactttccggtggtgacacatgtaaaggtcaattttccacggcaa |
22078041 |
T |
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| Q |
381 |
catttaaacacaaagaaagcatgct--agagggacatgtgtg |
420 |
Q |
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| T |
22078040 |
catttcaacacaaagatagcatgctagagagggacatgtgtg |
22077999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 359
Target Start/End: Complemental strand, 22058051 - 22057897
Alignment:
| Q |
207 |
catggtgtttcttatatctgggaagataacaaaa-catgttcctaatctttacattacagcatt---atgtacaaaacaaaacatttcaacacaaagata |
302 |
Q |
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| T |
22058051 |
catgatgtctcttatctgtggaaagataacaaaaacatgtttctaatctttacattacaacattagaaagtac-aaacaaaacattataagacaatgata |
22057953 |
T |
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| Q |
303 |
gcatgctagatcnnnnnnnatatcatgcaacatgagacttttcggtggtgacatgta |
359 |
Q |
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| T |
22057952 |
gcatgctagat-actttttaaatcatgtaacatgagactttccgatggtgacatgta |
22057897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 22058097 - 22058049
Alignment:
| Q |
114 |
gaataccaagcatatcattcaaatgtagttagttagttaaaagttagcat |
163 |
Q |
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| T |
22058097 |
gaatgccaagcatatcattcaaatgtagttagtaagat-aaagttagcat |
22058049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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