View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_11 (Length: 425)
Name: NF18537_low_11
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 421
Target Start/End: Complemental strand, 8445108 - 8444702
Alignment:
| Q |
16 |
atatagacaatataactttatcaagatttaattaattttcttattatctattgactattgaagtgtcttattcacaagaataattttttattttatagag |
115 |
Q |
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| T |
8445108 |
atatagacaatataactttatcaagatttaattaattttcttattatctattgactattgaagtgtcttattcacaagaataattttttattttatagag |
8445009 |
T |
|
| Q |
116 |
gataatttatagcttttatttaaactcataaaagagtaataagatatacannnnnnngagaggaagagtatgatatacatgtttcataacaattttttct |
215 |
Q |
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| T |
8445008 |
gataatttatagcttttatttaaactcataaaagagtaa---gatatacatttttttgagaggaagagtatgataaacatgtttcataacaattttttct |
8444912 |
T |
|
| Q |
216 |
tatagaattgtaacatttgttttacaag-ttacagcatattttggcagcttatcatttttatgtcgactttacccttttttatcttaatggaaaaa---a |
311 |
Q |
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| T |
8444911 |
tatagaattataacatttgttttacaagtttacagcatattttggtagcttatcatttttatgtcaactttaccc-ttattatcttaatggaaaaaaata |
8444813 |
T |
|
| Q |
312 |
taaatataac-nnnnnnnggtaatgttatactttttggtttaaatgttaattttgttgaacactataaatttagttcagtagtttatttgatactcgtca |
410 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||| | |
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| T |
8444812 |
aaaatataacttttttttggtaatgttatactttttggtttaaatgttaattttgttgaacactataaatttagttcactagtatatttgatacccgtta |
8444713 |
T |
|
| Q |
411 |
acttattagtt |
421 |
Q |
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| T |
8444712 |
acttattagtt |
8444702 |
T |
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