View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_14 (Length: 401)
Name: NF18537_low_14
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 107908 - 108291
Alignment:
| Q |
1 |
cctctcttgcaaccagtcctaaacacaagtgctgctgcaattctaaacctgattaatggtaattaattaccatttttgttttattgtaatggtaacaatt |
100 |
Q |
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| T |
107908 |
cctctcttgcaaccagtcctaaacacaagtgctgctgcaattctaaacctgattaatggtaattaattaccatttttgttttattgtaatggtaacagtt |
108007 |
T |
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| Q |
101 |
attgttgcggtagatgagagtatatttcctgttatttttgtttgatatgacatcgatttttccccaacatccattgttgcttattgaattgtattctgtt |
200 |
Q |
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| T |
108008 |
attgttgagctagatgagagtatatttcctgttattttcgttcgatatgacatcgatttttccccaacatccattgttgattattgaattgtattctgtt |
108107 |
T |
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| Q |
201 |
gctatttcaatgaatattagcagtttctatgtgcttcaaatatgtttgtgttcaagaggacaaaattttgtccttctgctgtgcagataatagctctctc |
300 |
Q |
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| T |
108108 |
gctatttcaatgaatattagcagtttctatgtgcttcaaatatgtttgtgttcaagaggacaagattttgtccttc-----tgcagataatagctctctc |
108202 |
T |
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| Q |
301 |
acttccttg----atacaggtacacaaacatttccaaattctactttgggatgggtgtatgtgaaagatgttgcaaatgcccatattct |
385 |
Q |
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| T |
108203 |
acttccttgatacatacaggtacacaaacatttccaaattctactttgggatgggtgtatgtgaaagatgttgcaaatgcccatattct |
108291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 176 - 385
Target Start/End: Original strand, 88978 - 89185
Alignment:
| Q |
176 |
gttgcttattgaattgtattctgttgctatttcaatgaatattagcagtttctatgtgcttcaaatatgtttgtgttcaagaggacaaaattttgtcctt |
275 |
Q |
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| T |
88978 |
gttgcttattgtgttctcttttgttgttattttaatgaatattagcagtttttatgtacttcaaatatgtttgtgttcaagaggacaagattttgtcctt |
89077 |
T |
|
| Q |
276 |
ctgctgtgcagataat---agctctctcacttccttgatacaggtacacaaacatttccaaattctactttgggatgggtgtatgtgaaagatgttgcaa |
372 |
Q |
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| || ||||||| |||||| ||||||||||||||||||| |||| |||||||||||| ||| ||| |||||||| |||||||||||||||||| |
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| T |
89078 |
c-----tgtagataatagaagctctttcacttccttgatacaggtgcacagacatttccaaatgctagttttggatgggtcaatgtgaaagatgttgcaa |
89172 |
T |
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| Q |
373 |
atgcccatattct |
385 |
Q |
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||||||||||||| |
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| T |
89173 |
atgcccatattct |
89185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 88413 - 88482
Alignment:
| Q |
1 |
cctctcttgcaaccagtcctaaacacaagtgctgctgcaattctaaacctgattaatggtaattaattac |
70 |
Q |
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| T |
88413 |
cctctcttgcaaccagtcctaaacacaagtgctgctgcaattctaaacctgattaatggtaattaattac |
88482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 2708065 - 2708144
Alignment:
| Q |
306 |
cttgatacaggtacacaaacatttccaaattctactttgggatgggtgtatgtgaaagatgttgcaaatgcccatattct |
385 |
Q |
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| T |
2708065 |
cttgatacaggtgcacaaacatttcgaaatgctagtttttgatgggtcaatgtgaaagatgttgcaaatgcccatattct |
2708144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 88839 - 88900
Alignment:
| Q |
76 |
ttgttttattgtaatggtaacaattattgttgcggtagatgagagtatatttcctgttattt |
137 |
Q |
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|||||| |||||||| ||| || ||||||||| | | ||||||||| ||||||||||||||| |
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| T |
88839 |
ttgtttaattgtaatcgtagcagttattgttgagctggatgagagtctatttcctgttattt |
88900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2707634 - 2707678
Alignment:
| Q |
1 |
cctctcttgcaaccagtcctaaacacaagtgctgctgcaattcta |
45 |
Q |
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||||||||||| |||||||| || ||||||||||| ||||||||| |
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| T |
2707634 |
cctctcttgcagccagtccttaaaacaagtgctgcggcaattcta |
2707678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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