View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_16 (Length: 381)
Name: NF18537_low_16
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 40377921 - 40377575
Alignment:
| Q |
11 |
taatactcaatctctgaatattcattcattaacttttgtgcattgaaagaatgcgacctctcggttcatataccaaattatattttgggatatcggtgta |
110 |
Q |
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| T |
40377921 |
taatactcaatctctgaatattcattca----cttttgtgcattgaaagaatgcgacctctcggttcatataccaaattatattttgggatatcggtgta |
40377826 |
T |
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| Q |
111 |
catacgcggagtattgaagaccatatacnnnnnnnnaaggcaaatttattgataaagatcaaattatctttctgatcgattaaaaacccaataaagtaag |
210 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40377825 |
catacgcggagtattgaagaccatatacttttttttaaggcaaatttattaataaagatcaaattatctttctgatcgactaaaaacccaataaagtaag |
40377726 |
T |
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| Q |
211 |
gtcaattacgccaaaatccaagacaaacaaggcaaaacaaaatgaaggagcaccacacaaaagtacatcctgactccatctccacgtccaagtctgcctc |
310 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40377725 |
gttaattacgccaaaatccaagacaaacaaggcaaaacaaaatgaaggagcaccacacaaaagtacatcctgactccatctccacgtccatgtctgcctc |
40377626 |
T |
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| Q |
311 |
ttaagatcgtgtcgcacttcgcaaggaccattagcgctctcaacgtctgta |
361 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40377625 |
ttaatatcgtgtcacacttcgcaaggaccattagcgctctcaacgtctgta |
40377575 |
T |
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