View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_19 (Length: 366)
Name: NF18537_low_19
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_19 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 29372920 - 29373269
Alignment:
| Q |
1 |
tgaagagaggttatgtgtttatttcgcatgccgttctttgggttatttggagataacaaaatgggagaattttcaatgataaaggaaaggatattgatga |
100 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29372920 |
tgaagataggttatgtgtttatttggcatgccgttctttgggttatttggagataacaaaatgggagaattttcaatgataaaggaaaggatattgatga |
29373019 |
T |
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| Q |
101 |
ggttgttgaagaaatcaagcttgtttcatagcattggactttgagtagattgaagattgtttatggcctcttttattagtggtgttggaacccgagggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| |
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| T |
29373020 |
ggttgttgaagaaatcaagcttgtttcatagcattggactttgagtagattgaagattgtttatggcctcttttatgagtggtgttggaacctgagagag |
29373119 |
T |
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| Q |
201 |
tgactgaggaggtagtggagttttcgtctctgtttgggactgttttggtgtccgattgggtttgttggctgctggtccagcagagtggcaggg--attgt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
29373120 |
tgactgaggaggtagtggagttttcgtctctgtttgggactgttttggtgtccgattgggtttgttggctgctggtccagcagagtggcagggccactgt |
29373219 |
T |
|
| Q |
299 |
tgatttttctgctatggtgagtctgtgtgctgcggctggcattgccttta |
348 |
Q |
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| T |
29373220 |
tgatttttctgctatggtgtgtctgtgtgctgcggctggcattgccttta |
29373269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 10642960 - 10643011
Alignment:
| Q |
227 |
tctctgtttgggactgttttggtgtccgattgggtttgttggctgctggtcc |
278 |
Q |
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| T |
10642960 |
tctctgtttgggtctgttttggtgtctgattggtgttgttggctgctggtcc |
10643011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 32712878 - 32712827
Alignment:
| Q |
227 |
tctctgtttgggactgttttggtgtccgattgggtttgttggctgctggtcc |
278 |
Q |
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| T |
32712878 |
tctctgtttgggtctgttttggtgttcgattggtgttgttggctgctggtcc |
32712827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 11682133 - 11682092
Alignment:
| Q |
242 |
gttttggtgtccgattgggtttgttggctgctggtccagcag |
283 |
Q |
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| T |
11682133 |
gttttggtgtccgattggtattgttggctgctggttcagcag |
11682092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 3534 - 3585
Alignment:
| Q |
227 |
tctctgtttgggactgttttggtgtccgattgggtttgttggctgctggtcc |
278 |
Q |
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| T |
3534 |
tctctgtttgggtctgttttggtgtccgattggtgttgttggctgctggtcc |
3585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 23923689 - 23923638
Alignment:
| Q |
227 |
tctctgtttgggactgttttggtgtccgattgggtttgttggctgctggtcc |
278 |
Q |
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| T |
23923689 |
tctctgtttgggtctgttttggtgtccgattggcgttgttggctgctggtcc |
23923638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 23923561 - 23923520
Alignment:
| Q |
242 |
gttttggtgtccgattgggtttgttggctgctggtccagcag |
283 |
Q |
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| T |
23923561 |
gttttggtgtccaattggtgttgttggctgctggtccagcag |
23923520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 17257070 - 17257131
Alignment:
| Q |
141 |
ttgagtagattgaagattgtttatggcctcttttattagtggtgttggaacccgagggagtg |
202 |
Q |
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| T |
17257070 |
ttgagtaggttgaagattgcttcttgcctcttttacgagtggtgttggaacccaagggagtg |
17257131 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 43441405 - 43441337
Alignment:
| Q |
134 |
ttggactttgagtagattgaagattgtttatggcctcttttattagtggtgttggaacccgagggagtg |
202 |
Q |
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| T |
43441405 |
ttggtctttgagtagattgaggatagtttcttgcttcttttacgagtggtgttggaatccgagagagtg |
43441337 |
T |
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