View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_2 (Length: 676)
Name: NF18537_low_2
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 18 - 664
Target Start/End: Original strand, 580162 - 580808
Alignment:
| Q |
18 |
agtttagccatggatcacgtttctctttttctctgtactttgtataattggtcttttctagattcatggttatcaaacatctttaagcggagagttaaaa |
117 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580162 |
agtttagccatggatcacgtttctcttttcctctttactttgtataattggtctcttctagattcatggttatcaaacatctttaagcggagagttaaaa |
580261 |
T |
|
| Q |
118 |
ttcttcaaatccattcnnnnnnncaaatcccattctccgttctcgcttctcattctcttttcaataactttttgttgttagaagaattggagttgcttac |
217 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580262 |
ttcttcaaatccattctttttttcaaatcccattctccgttctcgcttctcattctcttttcaataactttttgttgttagaagaattggagttgcttac |
580361 |
T |
|
| Q |
218 |
tgattccatttcctttattaatgttcctatgtacgatgaagaattgaaattgcttcgaaattcttttaattccgttgatgttcccgctcccagcaaatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580362 |
tgattccatttcctttattaatgttcctatgtacgatgaagaattgaaattgcttcgaaattcttttaattccgttgatgttcccgctcccagcaaatat |
580461 |
T |
|
| Q |
318 |
attctatttcgaaacttgaaaattctaaacttgtgtggaatcgactttaacaccaactcacccaaatcttggcgcaatgttcatcttgaattccccctcc |
417 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
580462 |
attgtatttcgaaacttgaaaattctcaacttgtgtggaatcaactttaacaccgactcacccaaatcttggcgcaatgttcatcttgaattccctctcc |
580561 |
T |
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| Q |
418 |
taacaaaatttgaggctaaaaactgcgcttggtttgttgatacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgt |
517 |
Q |
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| T |
580562 |
taacaaaatttgaggctaaaaactgcgcttggtttgttgatacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcgaacatagcgt |
580661 |
T |
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| Q |
518 |
cggtgttccttgtaaacgtgacaaatcatttatctgcttccctgattctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacatt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580662 |
cggtgttccttgtaaacgtgacaaatcatttatctgcttccctgattctgaggatctgaaagaattcagtttttgcggttttgatatatcacaaaacatt |
580761 |
T |
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| Q |
618 |
ataattaagtccccatgccatgcttcggctaaaatcaatttagatga |
664 |
Q |
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| T |
580762 |
ataattaagtccccatgccatgcttcagctaaaatcaatttatatga |
580808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 1213863 - 1213916
Alignment:
| Q |
162 |
gcttctcattctcttttcaataactttttgttgttagaagaattggagttgctt |
215 |
Q |
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| T |
1213863 |
gcttctgattctcttttcaaaaactttttgctattagaagaattggaattgctt |
1213916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 408 - 452
Target Start/End: Original strand, 1200763 - 1200807
Alignment:
| Q |
408 |
ttccccctcctaacaaaatttgaggctaaaaactgcgcttggttt |
452 |
Q |
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| T |
1200763 |
ttcccactcctaacaaaatttgaggccaaaaactgtgattggttt |
1200807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 408 - 512
Target Start/End: Complemental strand, 8192831 - 8192727
Alignment:
| Q |
408 |
ttccccctcctaacaaaatttgaggctaaaaactgcgcttggtttgttgatacatctttggttatgatatacgcgcctctacttgaaagcatttcaatcg |
507 |
Q |
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||||| || ||||||||||||||| | |||||||||||||||||||||||| || ||| ||| ||| | || |||||||||||||| ||||| || | |
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| T |
8192831 |
ttcccacttctaacaaaatttgagaccaaaaactgcgcttggtttgttgatgcaacttgggtctctatagatgctcctctacttgaaagtatttccattg |
8192732 |
T |
|
| Q |
508 |
aacat |
512 |
Q |
| |
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||||| |
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| T |
8192731 |
aacat |
8192727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 8193171 - 8193030
Alignment:
| Q |
73 |
ttctagattcatggttatcaaacatctttaagcggagagttaaaattcttcaaatccattcnnnnnnncaaatcccattctccgttctcgcttctcattc |
172 |
Q |
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|||||||| |||||| || |||||||| || || |||||||||| ||||| ||||||||| ||| || ||||||||||||| |||||| |||| |
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| T |
8193171 |
ttctagatatatggttctctaacatcttcaaccgcagagttaaaaatcttcgaatccattcgcagtttcaactctcattctccgttcttgcttctgattc |
8193072 |
T |
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| Q |
173 |
tcttttcaataactttttgttgttagaagaattggagttgct |
214 |
Q |
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||| || || || || | || |||||||||||||| ||||| |
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| T |
8193071 |
tctatttaaaaatttcatattattagaagaattggaattgct |
8193030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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