View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18537_low_20 (Length: 363)
Name: NF18537_low_20
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 62 - 348
Target Start/End: Complemental strand, 19895584 - 19895298
Alignment:
| Q |
62 |
aagtttcaaccttaacacgtgaaaggtggatagcaccaaagcacattgggcatggctcacaagaagcatatatttcacactcagaaagttctatctgctt |
161 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
19895584 |
aagttacaaccttaacacgtgaaaggtggatagcaccaaagcacattgggcatggctcacaagaagcatatatttcacattcagaaagttcaatctgctt |
19895485 |
T |
|
| Q |
162 |
cagcttattacaagcctgaaaaatgatatcattatgtgtaaaaattagattaactaaaacnnnnnnnttaaggaaattatttgactaaaacttatttaat |
261 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
19895484 |
caacttcttacaagcctgaaaaatgatatcattgtgtgtaaaaattagattaactaatacaaaaaaattaaggaaattatttgactaaaacttatttaat |
19895385 |
T |
|
| Q |
262 |
tgaataacctctcttattgctgtgacttcagcatgagcagaggggtcagtgttccttagaaccatgttatgacaactagcaataact |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19895384 |
tgaataacctctcttattgctgtgacttcagcatgagcagaagggtcagtgttccttagaaccatgttatgacaactagcaataact |
19895298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 51283275 - 51283386
Alignment:
| Q |
68 |
caaccttaacacgtgaaaggtggatagcaccaaagcacattgggcatggctcacaagaagcatatatttcacactcagaaagttctatctgcttcagctt |
167 |
Q |
| |
|
||||||||| || ||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
51283275 |
caaccttaattcgggaaaggtggattgcaccaaagcacatggggcaaggttcacaagaagcatatatttcacaatctgaaagttctatctgcttaagctt |
51283374 |
T |
|
| Q |
168 |
attacaagcctg |
179 |
Q |
| |
|
||||||||||| |
|
|
| T |
51283375 |
cttacaagcctg |
51283386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 36225779 - 36225833
Alignment:
| Q |
91 |
atagcaccaaagcacattgggcatggctcacaagaagcatatatttcacactcag |
145 |
Q |
| |
|
|||||||||||||||||||| || || |||||||||||||||| |||||| |||| |
|
|
| T |
36225779 |
atagcaccaaagcacattggacaaggttcacaagaagcatatagttcacagtcag |
36225833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 9915465 - 9915433
Alignment:
| Q |
2 |
cctatatttatagggtcgaaagacctatttaag |
34 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
9915465 |
cctatatttatagggacgaaagacctatttaag |
9915433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University