View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18537_low_22 (Length: 359)
Name: NF18537_low_22
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 345
Target Start/End: Original strand, 48395224 - 48395550
Alignment:
| Q |
19 |
accagttgcgtataataacaaggttcgagaattggagagtcaaggtttagaggaagacatactcaacaagaaattggaacttctcagagttagtatatat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48395224 |
accagttgcgtataataacaaggttcgagaattggagagtcaaggtttagaggaagacatactcaacaagaaattggaacttctcagagttagtatatat |
48395323 |
T |
|
| Q |
119 |
gcatgatttaaatttttgtgtttgcattattattataggtgagacttgagaggtgctgatttggttaaccttaattgtatataggaatcatacactatca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48395324 |
gcatgatttaaatttttgtgtttgcattattattataggtgagacttgagaggtgatgatttggttaaccttaactgtatataggaatcatacactatca |
48395423 |
T |
|
| Q |
219 |
tgtcatcgccggatgaaagaagaatgtatgactggagcttgtccagagaagataacacagaaacatacatttggccatttgaggtagatgtttcagtact |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48395424 |
tgtcatcgccggatgaaagaagaatgtatgactggagcttgtccagagaagataacacagaaacatacatttggccatttgaggttgatgtttcagtact |
48395523 |
T |
|
| Q |
319 |
tcaagaaggagatcctccaccacaggt |
345 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
48395524 |
tcaagaaggagatcctccaccacaggt |
48395550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University