View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18537_low_24 (Length: 357)

Name: NF18537_low_24
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18537_low_24
NF18537_low_24
[»] chr2 (28 HSPs)
chr2 (9-303)||(20534047-20534356)
chr2 (30-86)||(41353515-41353571)
chr2 (37-83)||(5095978-5096024)
chr2 (17-84)||(13553146-13553215)
chr2 (30-87)||(34144569-34144626)
chr2 (30-86)||(5954501-5954557)
chr2 (19-84)||(10288149-10288216)
chr2 (30-86)||(27307249-27307305)
chr2 (30-85)||(14954617-14954672)
chr2 (30-85)||(35171244-35171299)
chr2 (29-84)||(36909860-36909915)
chr2 (35-81)||(5962640-5962686)
chr2 (17-84)||(11152702-11152771)
chr2 (30-84)||(30192369-30192423)
chr2 (30-84)||(44484674-44484728)
chr2 (30-83)||(3196105-3196158)
chr2 (30-83)||(6328667-6328720)
chr2 (30-83)||(9695079-9695132)
chr2 (30-83)||(13850202-13850255)
chr2 (30-83)||(23048101-23048154)
chr2 (20-82)||(38246757-38246821)
chr2 (31-75)||(6742429-6742473)
chr2 (50-86)||(27334771-27334807)
chr2 (11-80)||(28244354-28244425)
chr2 (23-86)||(28481778-28481842)
chr2 (48-80)||(31009578-31009610)
chr2 (30-82)||(34373006-34373058)
chr2 (50-86)||(44950739-44950775)
[»] chr7 (16 HSPs)
chr7 (30-83)||(44175545-44175598)
chr7 (30-86)||(12141896-12141952)
chr7 (31-83)||(37355132-37355184)
chr7 (17-86)||(38096442-38096513)
chr7 (20-83)||(29763830-29763895)
chr7 (30-84)||(43079650-43079704)
chr7 (17-83)||(49167860-49167926)
chr7 (48-83)||(1284414-1284449)
chr7 (30-85)||(38023442-38023497)
chr7 (14-81)||(21153052-21153121)
chr7 (57-90)||(8560114-8560147)
chr7 (30-83)||(28081800-28081853)
chr7 (20-86)||(30864423-30864491)
chr7 (30-83)||(33050183-33050236)
chr7 (23-84)||(13437197-13437260)
chr7 (17-86)||(37392040-37392111)
[»] chr3 (41 HSPs)
chr3 (17-86)||(16267900-16267971)
chr3 (30-91)||(7232-7293)
chr3 (17-87)||(27198163-27198235)
chr3 (17-86)||(35376554-35376625)
chr3 (17-86)||(47849669-47849740)
chr3 (16-83)||(4189737-4189804)
chr3 (35-90)||(20893265-20893320)
chr3 (24-86)||(5398915-5398977)
chr3 (33-86)||(39901588-39901642)
chr3 (23-86)||(53932400-53932465)
chr3 (30-83)||(1834506-1834559)
chr3 (30-86)||(27936961-27937017)
chr3 (30-82)||(40419660-40419712)
chr3 (29-85)||(52727465-52727521)
chr3 (30-86)||(53473607-53473663)
chr3 (30-80)||(16139313-16139363)
chr3 (57-91)||(26668834-26668868)
chr3 (30-84)||(27646497-27646551)
chr3 (30-84)||(43409380-43409434)
chr3 (30-84)||(45902410-45902464)
chr3 (17-83)||(1295332-1295400)
chr3 (30-83)||(2482692-2482745)
chr3 (30-83)||(11327108-11327161)
chr3 (30-83)||(31176458-31176511)
chr3 (30-83)||(47141618-47141671)
chr3 (50-87)||(47774013-47774050)
chr3 (50-91)||(52431227-52431268)
chr3 (30-86)||(8254024-8254080)
chr3 (30-86)||(12792635-12792691)
chr3 (31-75)||(24703890-24703934)
chr3 (30-86)||(27162487-27162543)
chr3 (23-90)||(29222410-29222478)
chr3 (43-79)||(30727943-30727979)
chr3 (23-83)||(32622374-32622434)
chr3 (30-86)||(36818953-36819009)
chr3 (35-83)||(43441672-43441720)
chr3 (30-85)||(48405408-48405464)
chr3 (23-83)||(49167681-49167741)
chr3 (31-83)||(52100261-52100313)
chr3 (30-86)||(52454112-52454168)
chr3 (50-86)||(55344334-55344370)
[»] chr8 (19 HSPs)
chr8 (23-85)||(2597169-2597232)
chr8 (17-85)||(36740312-36740382)
chr8 (30-81)||(43186298-43186349)
chr8 (17-84)||(3650112-3650181)
chr8 (30-83)||(41406874-41406927)
chr8 (30-86)||(69609-69665)
chr8 (29-80)||(7129536-7129587)
chr8 (20-84)||(30927937-30928003)
chr8 (30-84)||(36064029-36064083)
chr8 (30-91)||(39259073-39259134)
chr8 (30-86)||(2070931-2070988)
chr8 (48-85)||(8955724-8955761)
chr8 (50-83)||(30112838-30112871)
chr8 (33-86)||(33817153-33817206)
chr8 (17-83)||(41344672-41344740)
chr8 (30-86)||(32674250-32674306)
chr8 (14-86)||(35564286-35564361)
chr8 (11-84)||(42443103-42443178)
chr8 (30-86)||(44380632-44380688)
[»] chr6 (16 HSPs)
chr6 (30-92)||(17417253-17417315)
chr6 (30-80)||(29197727-29197777)
chr6 (29-82)||(12501475-12501528)
chr6 (37-86)||(14426945-14426994)
chr6 (30-86)||(3339517-3339573)
chr6 (30-85)||(11017381-11017436)
chr6 (33-86)||(11785352-11785405)
chr6 (53-86)||(15722544-15722577)
chr6 (17-85)||(22492032-22492100)
chr6 (30-83)||(25995442-25995495)
chr6 (17-83)||(26094905-26094973)
chr6 (16-86)||(30796077-30796149)
chr6 (17-86)||(11635614-11635685)
chr6 (17-86)||(11742985-11743056)
chr6 (17-85)||(16368049-16368120)
chr6 (30-82)||(30253331-30253383)
[»] chr4 (35 HSPs)
chr4 (30-84)||(34259814-34259868)
chr4 (31-86)||(23094373-23094428)
chr4 (30-85)||(24235318-24235373)
chr4 (30-85)||(33484126-33484181)
chr4 (29-86)||(44170636-44170693)
chr4 (30-86)||(3222986-3223042)
chr4 (30-86)||(36444413-36444469)
chr4 (30-86)||(44368220-44368276)
chr4 (25-84)||(15638160-15638219)
chr4 (17-93)||(35661600-35661678)
chr4 (16-88)||(51389311-51389385)
chr4 (30-80)||(19879776-19879826)
chr4 (30-84)||(51107459-51107513)
chr4 (30-84)||(52669627-52669681)
chr4 (30-84)||(54801505-54801559)
chr4 (30-86)||(961273-961330)
chr4 (30-83)||(8680941-8680994)
chr4 (30-83)||(9032780-9032833)
chr4 (30-83)||(29384215-29384268)
chr4 (23-84)||(33860553-33860613)
chr4 (16-85)||(39158103-39158175)
chr4 (30-83)||(40258205-40258258)
chr4 (30-83)||(42178068-42178121)
chr4 (30-83)||(47105911-47105964)
chr4 (30-86)||(5208345-5208401)
chr4 (16-85)||(6953390-6953461)
chr4 (53-85)||(9162064-9162096)
chr4 (30-85)||(20381349-20381405)
chr4 (35-83)||(28203392-28203440)
chr4 (31-83)||(30866353-30866405)
chr4 (30-86)||(31221410-31221466)
chr4 (44-84)||(31559537-31559577)
chr4 (48-84)||(31804365-31804401)
chr4 (31-83)||(32901329-32901381)
chr4 (30-90)||(52487287-52487347)
[»] chr1 (40 HSPs)
chr1 (30-87)||(27352626-27352683)
chr1 (23-85)||(36669379-36669443)
chr1 (17-85)||(23554749-23554819)
chr1 (14-85)||(835869-835942)
chr1 (30-83)||(3919300-3919353)
chr1 (17-74)||(26839391-26839448)
chr1 (30-82)||(13362624-13362676)
chr1 (30-86)||(16479922-16479978)
chr1 (30-86)||(47113271-47113327)
chr1 (30-85)||(11097902-11097957)
chr1 (30-85)||(26547232-26547287)
chr1 (30-85)||(29489377-29489432)
chr1 (48-83)||(42299222-42299257)
chr1 (17-85)||(43755681-43755751)
chr1 (30-84)||(586898-586952)
chr1 (53-91)||(1690438-1690476)
chr1 (17-84)||(26101393-26101462)
chr1 (30-84)||(26501294-26501348)
chr1 (23-85)||(32882943-32883004)
chr1 (33-83)||(34157806-34157856)
chr1 (30-84)||(34941938-34941992)
chr1 (30-84)||(39128409-39128463)
chr1 (30-84)||(43457837-43457891)
chr1 (33-83)||(49699773-49699823)
chr1 (30-83)||(2177275-2177328)
chr1 (17-82)||(4604532-4604597)
chr1 (30-83)||(25995460-25995513)
chr1 (30-87)||(28907553-28907610)
chr1 (30-83)||(32938859-32938912)
chr1 (17-87)||(41885717-41885789)
chr1 (30-83)||(49621363-49621416)
chr1 (53-86)||(50797788-50797821)
chr1 (11-80)||(51172304-51172373)
chr1 (30-86)||(1156476-1156532)
chr1 (31-75)||(5043100-5043144)
chr1 (30-86)||(7078518-7078574)
chr1 (17-86)||(11038259-11038330)
chr1 (50-82)||(41029034-41029066)
chr1 (30-86)||(42256457-42256513)
chr1 (30-82)||(52714979-52715031)
[»] chr5 (17 HSPs)
chr5 (17-86)||(7144574-7144645)
chr5 (17-86)||(38500940-38501011)
chr5 (30-83)||(27440479-27440532)
chr5 (31-83)||(6538870-6538922)
chr5 (17-86)||(31626079-31626150)
chr5 (19-83)||(36581470-36581536)
chr5 (29-95)||(2050915-2050981)
chr5 (48-86)||(7927352-7927390)
chr5 (31-85)||(14914370-14914424)
chr5 (17-84)||(22402629-22402698)
chr5 (30-84)||(27005497-27005551)
chr5 (17-83)||(17063865-17063933)
chr5 (30-83)||(22920510-22920563)
chr5 (30-83)||(38010872-38010925)
chr5 (30-82)||(34400619-34400671)
chr5 (17-86)||(35098735-35098806)
chr5 (23-84)||(35814452-35814515)
[»] scaffold0592 (1 HSPs)
scaffold0592 (17-86)||(8310-8381)
[»] scaffold0004 (1 HSPs)
scaffold0004 (30-84)||(249160-249214)
[»] scaffold0153 (1 HSPs)
scaffold0153 (54-83)||(18526-18555)
[»] scaffold0018 (1 HSPs)
scaffold0018 (16-86)||(35999-36071)
[»] scaffold0011 (1 HSPs)
scaffold0011 (30-83)||(18595-18648)
[»] scaffold0330 (1 HSPs)
scaffold0330 (50-86)||(4038-4074)
[»] scaffold0049 (1 HSPs)
scaffold0049 (23-83)||(72180-72240)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 20534047 - 20534356
Alignment:
Q  9 gaaataaa-ataatatgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttcaaataaacgccgcgtaatcc 107  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||||  |||| ||| ||    
T  20534047 gaaataaagataatatgaatatgagagaaaattgttcaacaattatcacaaaatggttgtgcaaatatcatttctcttacaaataaagcccgcctaaacc 20534146  T
Q  108 ctttcatttagttccatccctaacaaaacataactaaactaaattaagagaatttttcgacaatctaaaattttgttagatactagtaattcct--aaaa 205  Q
     ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  |||||  ||||    
T  20534147 ttttaatatagttccatacctaacaaaacataactaaactaaattaagagaatttttcgatactctaaaattttgttagatactagtgtttcctaaaaaa 20534246  T
Q  206 acaatgttaagatactgata-ttgtaagcaaaattaatttaaaatttaa-----------tgttctgctattaaaatattctttttagtcctacaccagc 293  Q
    | |||||||||||||||||| ||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||| |    
T  20534247 aaaatgttaagatactgatatttgtaagcaaaattaatttaaaatttaatggacaacttctgttctgctattaaaatattctttttagtcctacaccaac 20534346  T
Q  294 acattgaatt 303  Q
    ||||||||||    
T  20534347 acattgaatt 20534356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 41353515 - 41353571
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||| || |||||||| ||| ||||||||||||||| ||||||||||    
T  41353515 gagagaaagttgttaaaaaattatcataaattgattgtacaaatatcatttctcttt 41353571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 5095978 - 5096024
Alignment:
Q  37 agttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||| ||| |||||||||||||||||||||||||||| |||||||    
T  5095978 agttgtccaaaaattatcacaaaatgattgtacaaatatcatttctc 5096024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 13553215 - 13553146
Alignment:
Q  17 ataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||||||||||||||  || |||| ||| |||||||||||| || |||||||||||| ||||||||    
T  13553215 ataatatgagtatgagagagaaaattgtccaaaaattatcacaaagtggttgtacaaatatcatttctct 13553146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 34144569 - 34144626
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttc 87  Q
    ||||||||||||| ||| |||| ||||||| || |||||||||||| |||||||||||    
T  34144569 gagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctctttc 34144626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 5954501 - 5954557
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| | |||||||| |||| |||||||||||| ||||||||||    
T  5954501 gagagaaagttgtccaaaagttatcacataatggttgtacaaatatcatttctcttt 5954557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 10288216 - 10288149
Alignment:
Q  19 aatatgagtatgagagaaa--gttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||||||||||||||  |||||  || ||||||||||||||  |||||||||||| ||||||||    
T  10288216 aatatgagtatgagagaaaaagttgtctaaaaattatcacaaaatagttgtacaaatatcatttctct 10288149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 27307249 - 27307305
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| | || ||||||| ||||||||||||||| ||||||||||    
T  27307249 gagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctcttt 27307305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 14954617 - 14954672
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||||||| | || ||||||||||  ||||||||||| |||||||||    
T  14954617 gagagaaagttgttcaaaagttgtcacaaaatgtatgtacaaatatcatttctctt 14954672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 35171244 - 35171299
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||| | | |||| |||||||||| |||||||||||| |||||||||    
T  35171244 gagagaaagttgtaccaaaattgtcacaaaatggttgtacaaatatcatttctctt 35171299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 36909860 - 36909915
Alignment:
Q  29 tgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||||||||| ||| | || |||||||||| |||||||||||| ||||||||    
T  36909860 tgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctct 36909915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 5962686 - 5962640
Alignment:
Q  35 aaagttgttcaacaattatcacaaaatgattgtacaaatattatttc 81  Q
    |||||||| ||| |||||||||| ||||||||||||||||| |||||    
T  5962686 aaagttgtccaaaaattatcacataatgattgtacaaatatcatttc 5962640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 11152702 - 11152771
Alignment:
Q  17 ataatatgagtatgagagaaa--gttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||||||||| |  ||||| ||| ||||||   ||||||||||||||||||| ||||||||    
T  11152702 ataatatgagtatgagagagaaggttgtacaaaaattatataaaaatgattgtacaaatatcatttctct 11152771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 30192369 - 30192423
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||| |||||||| |||| | |||||||||||| |||||||| ||||||||    
T  30192369 gagagaaaattgttcaaaaatttttacaaaatgattgaacaaatatcatttctct 30192423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 44484674 - 44484728
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||| ||| |||| | |||||||| |||||||||||| ||||||||    
T  44484674 gagagaaagttgtacaaaaattgttacaaaatggttgtacaaatatcatttctct 44484728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 3196105 - 3196158
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| | || ||||||| ||||||||||||||| |||||||    
T  3196105 gagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 3196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 6328720 - 6328667
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| ||||||  ||||||| |||||||||||| |||||||    
T  6328720 gagagaaagttgtacaaaaattataccaaaatggttgtacaaatatcatttctc 6328667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 9695079 - 9695132
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| ||||||| || |||| |||||||||||| |||||||    
T  9695079 gagagaaagttgtccaaaaattatctcataatggttgtacaaatatcatttctc 9695132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 13850202 - 13850255
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| ||||||  ||||||||||||| |||||| |||||||    
T  13850202 gagagaaagttgtacaaaaattatatcaaaatgattgtataaatatcatttctc 13850255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 23048101 - 23048154
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||| | ||| ||||||| |||| ||||||||||||||| |||||||    
T  23048101 gagagaaagttatacaaaaattatctcaaattgattgtacaaatatcatttctc 23048154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 38246757 - 38246821
Alignment:
Q  20 atatgagtatgaga--gaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct 82  Q
    ||||||||||||||  ||||||| | ||| |||| ||||||| ||||||||||||||| ||||||    
T  38246757 atatgagtatgagagagaaagttctacaaaaattgtcacaaattgattgtacaaatatcatttct 38246821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 6742429 - 6742473
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatat 75  Q
    |||||||||||||||| | || ||||||||||||| |||||||||    
T  6742429 agagaaagttgttcaaaagttgtcacaaaatgattttacaaatat 6742473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 27334807 - 27334771
Alignment:
Q  50 ttatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  27334807 ttatcacaaaataattgtacaattattatttctcttt 27334771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 28244354 - 28244425
Alignment:
Q  11 aataaaataatatgagtatgaga--gaaagttgttcaacaattatcacaaaatgattgtacaaatattattt 80  Q
    ||||| ||||| |||||||||||  |||||||||| |  |||||||||| | ||||||||||||||| ||||    
T  28244354 aataacataatgtgagtatgagagagaaagttgttaagaaattatcacatagtgattgtacaaatatcattt 28244425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 28481842 - 28481778
Alignment:
Q  23 tgagtatgagagaaagttgttcaacaa-ttatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| |||||||| | || || ||| |||||| |||| ||||||||||||||||||    
T  28481842 tgagtatgagagagagttgttccaaaagttgtcaaaaaatggttgttcaaatattatttctcttt 28481778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 31009610 - 31009578
Alignment:
Q  48 aattatcacaaaatgattgtacaaatattattt 80  Q
    |||||||||||||| ||||||||||||||||||    
T  31009610 aattatcacaaaataattgtacaaatattattt 31009578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 34373058 - 34373006
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct 82  Q
    ||||||||||||| ||| ||||||  ||||||| |||||||||||| ||||||    
T  34373058 gagagaaagttgtacaaaaattataccaaaatggttgtacaaatatcatttct 34373006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 44950739 - 44950775
Alignment:
Q  50 ttatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  44950739 ttatcacaatatgattgtacaaatatcatttctcttt 44950775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 44175598 - 44175545
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  44175598 gagagaaagttgtacaaaagttatcacaaaatgattgtacaaatattatttctc 44175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 12141952 - 12141896
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||| |||||||||||| | ||||||||||||| |||||||||||| ||||||||||    
T  12141952 gagaaaaagttgttcaaaagttatcacaaaatggttgtacaaatatgatttctcttt 12141896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 37355184 - 37355132
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||||||| |||||||| ||||| |||||| ||||||||||||||    
T  37355184 agagaaagttgttcaaaaattatcataaaataattgtataaatattatttctc 37355132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 38096442 - 38096513
Alignment:
Q  17 ataatatgagtatga--gagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||||  |||| ||||||  || |||| |||||||||| |||||||||||||||||||||||    
T  38096442 ataatatgagtatgaaagagagagttgtcaaaaaattgtcacaaaatggttgtacaaatattatttctcttt 38096513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 29763895 - 29763830
Alignment:
Q  20 atatgagtatgaga--gaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||||| |||||||||||| |||||||    
T  29763895 atatgagtatgagaaagaaagttgtacaaaagttatcacaaaatggttgtacaaatatcatttctc 29763830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 43079650 - 43079704
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||| ||| |||||||||||| || |||||||||||| ||||||||    
T  43079650 gagagaaagttgtccaaaaattatcacaaagtggttgtacaaatatcatttctct 43079704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 49167860 - 49167926
Alignment:
Q  17 ataatatgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||| |||| | ||||||  || |||||||||||||| ||||||||||||| |||||||    
T  49167860 ataatatgagtaggagatagagttgtctaaaaattatcacaaaataattgtacaaatatcatttctc 49167926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 1284449 - 1284414
Alignment:
Q  48 aattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||| |||||||||||||||||||||||||||    
T  1284449 aattatcaaaaaatgattgtacaaatattatttctc 1284414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 38023442 - 38023497
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    |||||||||||||  || |||||||||||| || |||||||||||| |||||||||    
T  38023442 gagagaaagttgtctaaaaattatcacaaagtggttgtacaaatatcatttctctt 38023497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 21153121 - 21153052
Alignment:
Q  14 aaaataatatgagtatgag--agaaagttgttcaacaattatcacaaaatgattgtacaaatattatttc 81  Q
    |||||||| ||||||||||  ||||||||||  || |||||| | ||||||||||||||||||| |||||    
T  21153121 aaaataatgtgagtatgaggaagaaagttgtcaaaaaattattagaaaatgattgtacaaatatcatttc 21153052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 8560147 - 8560114
Alignment:
Q  57 aaaatgattgtacaaatattatttctctttcaaa 90  Q
    |||||||||||||||||||||||||| |||||||    
T  8560147 aaaatgattgtacaaatattatttctatttcaaa 8560114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 28081800 - 28081853
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||||  || |||||| |||||||| |||||||||||| |||||||    
T  28081800 gagagaaagttgtaaaaaaattattacaaaatggttgtacaaatatcatttctc 28081853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 30864423 - 30864491
Alignment:
Q  20 atatgagtatgaga--gaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||||  ||||||||| ||| | || ||||||| || |||||||||||| ||||||||||    
T  30864423 atatgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcttt 30864491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 33050236 - 33050183
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| | || |||||||||| |||||||||||| |||||||    
T  33050236 gagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctc 33050183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 13437260 - 13437197
Alignment:
Q  23 tgagtatgagagaaa--gttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||||||||||  ||||||||| | || |||||||||| |||| ||||||| ||||||||    
T  13437260 tgagtatgagagaaaaagttgttcaaaagttgtcacaaaatggttgtgcaaatatcatttctct 13437197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 37392111 - 37392040
Alignment:
Q  17 ataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||| |||||||||||||  |||||||| || | || ||| |||||| |||||||||||| ||||||||||    
T  37392111 ataatgtgagtatgagagataaagttgtttaaaagttgtcaaaaaatggttgtacaaatatcatttctcttt 37392040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 16267900 - 16267971
Alignment:
Q  17 ataatatgagtatgaga--gaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||||||  ||||||||||||| |||||| | ||||||||| ||||||||| ||||||||||    
T  16267900 ataatatgagtatgagagagaaagttgttcaaaaattattagaaaatgattatacaaatatcatttctcttt 16267971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 7232 - 7293
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttcaaat 91  Q
    ||||||||||||| ||| | || ||| ||||||||||||||||||| |||||||||||||||    
T  7232 gagagaaagttgtccaaaagttgtcagaaaatgattgtacaaatatcatttctctttcaaat 7293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 27198163 - 27198235
Alignment:
Q  17 ataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttc 87  Q
    |||||||||||||||||||  || ||||| || | |||||| ||||||||||||||||||| |||||||||||    
T  27198163 ataatatgagtatgagagataaaattgtttaaaagttatcaaaaaatgattgtacaaatatcatttctctttc 27198235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 35376554 - 35376625
Alignment:
Q  17 ataatatgagtatgaga--gaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||||||  |||||||||  || |||| |||||||||| |||||||||||| ||||||||||    
T  35376554 ataatatgagtatgagagagaaagttgtctaaaaattgtcacaaaatggttgtacaaatatcatttctcttt 35376625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 47849740 - 47849669
Alignment:
Q  17 ataatatgagtatg--agagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||| ||||||||  ||||||||||||  || ||||||||||||||| |||||||||||| ||||||||||    
T  47849740 ataatgtgagtatgtaagagaaagttgtcaaaaaattatcacaaaatggttgtacaaatatcatttctcttt 47849669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 4189804 - 4189737
Alignment:
Q  16 aataatatgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||  |||||| ||||| |||||||| |||||||||||||| ||| ||||||||| |||||||    
T  4189804 aataatataggtatgaaagaaaattgttcaaaaattatcacaaaataattctacaaatatcatttctc 4189737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 20893265 - 20893320
Alignment:
Q  35 aaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttcaaa 90  Q
    ||||||||  || ||||||||||||||| |||||||||||||||||||| ||||||    
T  20893265 aaagttgtcaaaaaattatcacaaaatggttgtacaaatattatttctcattcaaa 20893320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 5398977 - 5398915
Alignment:
Q  24 gagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||||||||  || |||| ||||||| || |||||||||||| ||||||||||    
T  5398977 gagtatgagagaaagttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctcttt 5398915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 39901642 - 39901588
Alignment:
Q  33 agaaagttgttc-aacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||| || |||||||| ||||||||||||||||||| ||||||||||    
T  39901642 agaaagttgttccaaaaattatcaaaaaatgattgtacaaatatcatttctcttt 39901588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 53932400 - 53932465
Alignment:
Q  23 tgagtatgagag--aaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||  |||||||| ||| |||| |||||||||| |||||||||||| ||||||||||    
T  53932400 tgagtatgagagtgaaagttgtccaaaaattgtcacaaaatggttgtacaaatatcatttctcttt 53932465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 1834559 - 1834506
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||||||| |||| |  ||||||| ||||||||||||||||||||    
T  1834559 gagagaaagttgttcaaaaattgtagcaaaatggttgtacaaatattatttctc 1834506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 27937017 - 27936961
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||| ||||| | || |||||||||| || ||||||||||||||||||||    
T  27937017 gagagaaagttattcaaaagttgtcacaaaatggttctacaaatattatttctcttt 27936961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 40419660 - 40419712
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct 82  Q
    |||||||| ||||  || |||||||||||||||||||||||||||| ||||||    
T  40419660 gagagaaaattgtctaaaaattatcacaaaatgattgtacaaatatcatttct 40419712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 52727465 - 52727521
Alignment:
Q  29 tgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||||  || |||||||| ||| ||||||||||||||| |||||||||    
T  52727465 tgagagaaagttgtcaaaaaattatcataaagtgattgtacaaatatcatttctctt 52727521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 53473663 - 53473607
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||| |||||||| ||| | |||||||||| ||||||||||||||| ||||||||||    
T  53473663 gagaaaaagttgtacaaaagttatcacaaattgattgtacaaatatcatttctcttt 53473607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 16139313 - 16139363
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattattt 80  Q
    |||||||| |||||||| | |||||| |||||| |||||||||||||||||    
T  16139313 gagagaaaattgttcaaaagttatcataaaatggttgtacaaatattattt 16139363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 26668868 - 26668834
Alignment:
Q  57 aaaatgattgtacaaatattatttctctttcaaat 91  Q
    ||||||||||||||||||||||||||| |||||||    
T  26668868 aaaatgattgtacaaatattatttctcattcaaat 26668834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 27646551 - 27646497
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||| |||||||| ||| ||||||  |||||||||||||||||||| ||||||||    
T  27646551 gagataaagttgtccaaaaattattgcaaaatgattgtacaaatatcatttctct 27646497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 43409380 - 43409434
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||| | ||| |||||||||||| || |||||||||||| ||||||||    
T  43409380 gagagaaagttttccaaaaattatcacaaagtggttgtacaaatatcatttctct 43409434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 45902410 - 45902464
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||| ||| |||||||| | |||| ||||||||||||| ||||||||||||||||    
T  45902410 gagataaaattgttcaaaatttattacaaaatgattgtgcaaatattatttctct 45902464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 1295400 - 1295332
Alignment:
Q  17 ataatatgagtatgagagaaa--gttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||| |||||||||||||||  ||||| ||| | ||||||||||||  |||||||||||| |||||||    
T  1295400 ataatgtgagtatgagagaaaaagttgtccaaaagttatcacaaaatagttgtacaaatatcatttctc 1295332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 2482692 - 2482745
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||||||| | || ||||||||||  ||||||||||| |||||||    
T  2482692 gagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctc 2482745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 11327161 - 11327108
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| | || |||||||||| |||||||||||| |||||||    
T  11327161 gagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctc 11327108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 31176458 - 31176511
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||||  || |||||||||||| || |||||||||||| |||||||    
T  31176458 gagagaaagttgtctaaaaattatcacaaagtggttgtacaaatatcatttctc 31176511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 47141618 - 47141671
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| ||||||  ||||||| |||||||||||| |||||||    
T  47141618 gagagaaagttgtacaaaaattataccaaaatggttgtacaaatatcatttctc 47141671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 47774013 - 47774050
Alignment:
Q  50 ttatcacaaaatgattgtacaaatattatttctctttc 87  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  47774013 ttatcacaaaatgaatgtacaaatatcatttctctttc 47774050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 52431227 - 52431268
Alignment:
Q  50 ttatcacaaaatgattgtacaaatattatttctctttcaaat 91  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  52431227 ttatcataaaatgattgtataaatattatttctcttttaaat 52431268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 8254080 - 8254024
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| | | | || |||||||||| |||||||||||| ||||||||||    
T  8254080 gagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctcttt 8254024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 12792691 - 12792635
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||  || |||| ||||||| || |||||||||||| ||||||||||    
T  12792691 gagagaaagttgtctaaaaattgtcacaaagtggttgtacaaatatcatttctcttt 12792635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 24703934 - 24703890
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatat 75  Q
    ||||||| |||||||| |||||||| |||||| ||||||||||||    
T  24703934 agagaaaattgttcaaaaattatcaaaaaatggttgtacaaatat 24703890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 27162487 - 27162543
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||||||| | || | |||||||| |||||||||||| | ||||||||    
T  27162487 gagagaaagttgttcaaaagttgttacaaaatggttgtacaaatatcacttctcttt 27162543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 29222410 - 29222478
Alignment:
Q  23 tgagtatgagagaaag-ttgttcaacaattatcacaaaatgattgtacaaatattatttctctttcaaa 90  Q
    ||||| |||||||||  |||||||| |||||||| |||||||||||| |||||| |||| |||| ||||    
T  29222410 tgagtgtgagagaaaaattgttcaaaaattatcataaaatgattgtataaatatcatttttcttccaaa 29222478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 30727943 - 30727979
Alignment:
Q  43 tcaacaattatcacaaaatgattgtacaaatattatt 79  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  30727943 tcaaaaattatcacaaaacgattgtacaaatattatt 30727979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 32622374 - 32622434
Alignment:
Q  23 tgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||||| |  || || |||||||| |||||||||||| |||||| |||||||    
T  32622374 tgagtatgagagaaattattttaaaaattatcaaaaaatgattgtataaatatcatttctc 32622434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 36819009 - 36818953
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| | || ||||||| || |||||||||||| ||||||||||    
T  36819009 gagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcttt 36818953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 43441720 - 43441672
Alignment:
Q  35 aaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||| |||| ||||| |||| |||||||||||| |||||||    
T  43441720 aaagttgttcaaaaattgtcacataatggttgtacaaatatcatttctc 43441672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 48405464 - 48405408
Alignment:
Q  30 gagagaaagttgtt-caacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    |||||||||||||| ||| | || |||||||||| |||||||||||| |||||||||    
T  48405464 gagagaaagttgttacaaaagttgtcacaaaatggttgtacaaatatcatttctctt 48405408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 49167681 - 49167741
Alignment:
Q  23 tgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||| ||||||||||| || ||||||||||||||   |||| |||||| |||||||    
T  49167681 tgagtatgaaagaaagttgttaaaaaattatcacaaaataggtgtagaaatatcatttctc 49167741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 52100313 - 52100261
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||| ||| |||||| | |||||| |||||||||||| |||||||    
T  52100313 agagaaagttgtacaaaaattattaaaaaatggttgtacaaatatcatttctc 52100261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 52454112 - 52454168
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||  ||| | || ||||||| ||||||||||||||| ||||||||||    
T  52454112 gagagaaagttgaacaaaagttgtcacaaattgattgtacaaatatcatttctcttt 52454168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Original strand, 55344334 - 55344370
Alignment:
Q  50 ttatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  55344334 ttatcacaaaatggttgtacaaatatcatttctcttt 55344370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 2597169 - 2597232
Alignment:
Q  23 tgagtatgagaga-aagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||| ||||||| ||| |||||||||| |||| ||||||||||||||||||||||    
T  2597169 tgagtatgagagagaagttgtccaaaaattatcacataatggttgtacaaatattatttctctt 2597232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 36740382 - 36740312
Alignment:
Q  17 ataatatgagtatgagag--aaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||| ||||||||  ||||||||  || ||||||||| |||||||||||||||||| |||||||||    
T  36740382 ataatatgaatatgagagggaaagttgtctaaaaattatcactaaatgattgtacaaatatcatttctctt 36740312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 43186349 - 43186298
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttc 81  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||| |||||    
T  43186349 gagagaaagttgtacaaaaattatcacaaaataattgtacaaatatcatttc 43186298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 3650181 - 3650112
Alignment:
Q  17 ataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||||||||||||||  |||||||| || |||||| ||||| || |||||||||||| ||||||||    
T  3650181 ataatatgagtatgagagagaaagttgttaaaaaattattacaaattggttgtacaaatatcatttctct 3650112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 41406874 - 41406927
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||||| || |||| ||| ||||||||||||||||||| |||||||    
T  41406874 gagagaaagttgttaaaaaattgtcaaaaaatgattgtacaaatatcatttctc 41406927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 69609 - 69665
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||| |||||||  || |||||||||||| ||||||||||||||| ||||||||||    
T  69609 gagaggaagttgtctaaaaattatcacaaagtgattgtacaaatatcatttctcttt 69665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 7129587 - 7129536
Alignment:
Q  29 tgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattattt 80  Q
    |||||||||||||| ||| | || |||||||||| |||||||||||||||||    
T  7129587 tgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatattattt 7129536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 30927937 - 30928003
Alignment:
Q  20 atatgagtatgaga--gaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||||  ||||||||| ||| |||| ||||||| || |||||||||||| ||||||||    
T  30927937 atatgagtatgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctct 30928003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 36064083 - 36064029
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||| |||| ||| | || ||||||||||||||||||||||| ||||||||    
T  36064083 gagagaaaattgtccaaaagttgtcacaaaatgattgtacaaatatcatttctct 36064029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 39259073 - 39259134
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct-ctttcaaat 91  Q
    ||||||||||| | ||| |||||||||||| ||||||||||||||| |||||| |||||||||    
T  39259073 gagagaaagttatacaa-aattatcacaaattgattgtacaaatatcatttctcctttcaaat 39259134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 2070988 - 2070931
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaa-tgattgtacaaatattatttctcttt 86  Q
    |||||||||||||  || ||||||||||||| ||||||| ||||||||| ||||||||    
T  2070988 gagagaaagttgtctaaaaattatcacaaaaatgattgttcaaatattacttctcttt 2070931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 8955724 - 8955761
Alignment:
Q  48 aattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  8955724 aattatcacaaaatgattgtttaaatattatttctctt 8955761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 83
Target Start/End: Original strand, 30112838 - 30112871
Alignment:
Q  50 ttatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||||||||||||||||| |||||||    
T  30112838 ttatcacaaaatgattgtacaaatataatttctc 30112871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 33817206 - 33817153
Alignment:
Q  33 agaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||| ||| |||| | ||||| ||||||||||||||| ||||||||||    
T  33817206 agaaagttgtacaaaaattgttacaaattgattgtacaaatatcatttctcttt 33817153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 41344672 - 41344740
Alignment:
Q  17 ataatatgagtatgagagaaa--gttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||||||||| |  |||||  || | |||||||||| ||||||||||||||| |||||||    
T  41344672 ataatatgagtatgagagagaaggttgtcaaaaagttatcacaaactgattgtacaaatatcatttctc 41344740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 32674250 - 32674306
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| | ||||  ||||||| |||||||||||| ||||||||||    
T  32674250 gagagaaagttgtacaaaagttataccaaaatggttgtacaaatatcatttctcttt 32674306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 35564361 - 35564286
Alignment:
Q  14 aaaataatatgagtatgag--agaaagttgtt-caacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||| ||||||||||  ||||||||||| ||| ||||||||| |||||  ||| ||||||| ||||||||||    
T  35564361 aaaataatgtgagtatgagatagaaagttgttgcaaaaattatcactaaatggatgttcaaatatcatttctcttt 35564286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 42443178 - 42443103
Alignment:
Q  11 aataaaataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||| ||||| |||||||||||||  |||||||  || | || |||| |||||||||||||||||| ||||||||    
T  42443178 aataatataatgtgagtatgagagagaaagttgtctaaaagttgtcactaaatgattgtacaaatatcatttctct 42443103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 44380632 - 44380688
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||| ||   || |||||||||| |||||||||||| ||||||||||    
T  44380632 gagagaaagttgtttaaaggttgtcacaaaatggttgtacaaatatcatttctcttt 44380688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 17417253 - 17417315
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttcaaata 92  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||||| |||||||||| |||||    
T  17417253 gagagaaagttgtccaaaaattgtcacataatgattgtacaaatatcatttctcttttaaata 17417315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 29197777 - 29197727
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattattt 80  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  29197777 gagagaaaattgtccaaaaattatcacaaaatgattgtacaaatattattt 29197727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 12501528 - 12501475
Alignment:
Q  29 tgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct 82  Q
    ||||||||||||||| || |||| ||||||||| ||||||||||||| ||||||    
T  12501528 tgagagaaagttgtttaaaaattgtcacaaaataattgtacaaatatcatttct 12501475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 14426994 - 14426945
Alignment:
Q  37 agttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||| ||||| |||||||||||||||||||||||||| |||| |||||    
T  14426994 agttgtccaacagttatcacaaaatgattgtacaaatatcatttttcttt 14426945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 3339517 - 3339573
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| | || |||||||||| |||||||||||| ||||||||||    
T  3339517 gagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctcttt 3339573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 11017436 - 11017381
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||| ||| | || |||| || |||||||||||||||||||||||||    
T  11017436 gagagaaagttgtacaaaagttgtcacgaattgattgtacaaatattatttctctt 11017381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 11785405 - 11785352
Alignment:
Q  33 agaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||  || |||| |||||||||| |||||||||||| ||||||||||    
T  11785405 agaaagttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctcttt 11785352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 15722544 - 15722577
Alignment:
Q  53 tcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||||||||||||| ||||||||||    
T  15722544 tcacaaaatgattgtacaaatatcatttctcttt 15722577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 22492032 - 22492100
Alignment:
Q  17 ataatatgagtatgagagaaagttgttcaacaa-ttatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| |||| |||||||||    
T  22492032 ataatataagtaagagagaaagttgt-caagaagttatcacaaaatggttgtacatatatcatttctctt 22492100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 25995495 - 25995442
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| ||||  ||||||||| |||||||||||| |||||||    
T  25995495 gagagaaagttgtacaaaaattgccacaaaatggttgtacaaatatcatttctc 25995442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 26094973 - 26094905
Alignment:
Q  17 ataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||| |||||||||||||  ||||||| ||| ||||  ||||||||| |||||||||||| |||||||    
T  26094973 ataatgtgagtatgagagataaagttgtacaaaaattgccacaaaatggttgtacaaatatcatttctc 26094905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 30796077 - 30796149
Alignment:
Q  16 aataatatgagtatga--gagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||| |||||||||  |||||||||||  || |||| ||||||| || |||||||||||| ||||||||||    
T  30796077 aataatgtgagtatgaaagagaaagttgtaaaaaaattgtcacaaagtggttgtacaaatatcatttctcttt 30796149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 11635685 - 11635614
Alignment:
Q  17 ataatatgagtatga--gagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||| |||||||||  ||||||||| || || |||||||| |||||  |||||||||||| ||||||||||    
T  11635685 ataatttgagtatgaaagagaaagttattaaaaaattatcataaaattgttgtacaaatatcatttctcttt 11635614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 11742985 - 11743056
Alignment:
Q  17 ataatatgagtatgagagaaag--ttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||| |||||||||||||||   ||||  || |||||||| |||||  |||||||||||||||||||||||    
T  11742985 ataatgtgagtatgagagaaaaaattgtctaaaaattatcaaaaaatagttgtacaaatattatttctcttt 11743056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 16368049 - 16368120
Alignment:
Q  17 ataatatgagtatgaga--gaaagttgtt-caacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||| |||||||||||  |||||||||| ||| |||||| | |||||| |||||||||||| |||||||||    
T  16368049 ataatgtgagtatgagaaagaaagttgttacaaaaattattataaaatggttgtacaaatatcatttctctt 16368120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 30253331 - 30253383
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct 82  Q
    |||||||||||||| || |||| | | ||| ||||||||||||||||||||||    
T  30253331 gagagaaagttgttaaaaaattgtaataaagtgattgtacaaatattatttct 30253383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 34259868 - 34259814
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||||||||| || |||||||||| |||||||||||| ||||||||    
T  34259868 gagagaaagttgttcaacagttgtcacaaaatggttgtacaaatatcatttctct 34259814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 23094428 - 23094373
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||  || | |||||||||||||||||||||||||| ||||||||||    
T  23094428 agagaaagttgtctaaaagttatcacaaaatgattgtacaaatatcatttctcttt 23094373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 24235373 - 24235318
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||| ||| |||| ||||||| ||||||||||||||| |||||||||    
T  24235373 gagagaaagttgtacaaaaattgtcacaaattgattgtacaaatatcatttctctt 24235318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 33484126 - 33484181
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||||| ||| |||||    
T  33484126 gagagaaagttgtccaaaaattatcacaaaatggttgtacaaatatcattactctt 33484181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 44170636 - 44170693
Alignment:
Q  29 tgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||||  || |||||| |||||||| |||||||||||| ||||||||||    
T  44170636 tgagagaaagttgtcaaaaaattataacaaaatggttgtacaaatatcatttctcttt 44170693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 3223042 - 3222986
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| | || ||||||| ||||||||||||||| ||||||||||    
T  3223042 gagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctcttt 3222986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 36444413 - 36444469
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||| || | |||||| |||||| |||||||||||| ||||||||||    
T  36444413 gagagaaagttgttaaaaagttatcataaaatggttgtacaaatatcatttctcttt 36444469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 44368220 - 44368276
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| | || ||||||| ||||||||||||||| ||||||||||    
T  44368220 gagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctcttt 44368276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 15638219 - 15638160
Alignment:
Q  25 agtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||| ||||||||||||| ||| | || ||| ||||||||||||||||||| ||||||||    
T  15638219 agtaagagagaaagttgtgcaaaagttgtcaaaaaatgattgtacaaatatcatttctct 15638160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 35661600 - 35661678
Alignment:
Q  17 ataatatgagtatgagagaaagt--tgttcaacaattatcacaaaatgattgtacaaatattatttctctttcaaataa 93  Q
    ||||| |||||||||||||||||  |||  || |||| ||| |||||| |||||||||||| ||||||||| |||||||    
T  35661600 ataatgtgagtatgagagaaagtgttgtctaaaaattgtcataaaatggttgtacaaatatcatttctcttacaaataa 35661678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 51389385 - 51389311
Alignment:
Q  16 aataatatgagtatga--gagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttca 88  Q
    |||||| |||||||||  |||||||||||  || |||| | || |||||||||||||||||| ||||||||||||    
T  51389385 aataatgtgagtatgaaagagaaagttgtcaaaaaattgttactaaatgattgtacaaatatcatttctctttca 51389311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 19879826 - 19879776
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattattt 80  Q
    |||||| | |||||||| |||||||| ||||||||||||||||||| ||||    
T  19879826 gagagagaattgttcaaaaattatcataaaatgattgtacaaatatcattt 19879776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 51107459 - 51107513
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||| ||| ||||||   ||||||||||||||||||| ||||||||    
T  51107459 gagagaaagttgtgcaaaaattatacaaaaatgattgtacaaatatcatttctct 51107513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 52669627 - 52669681
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||| ||| | |||||||||| || |||||||||||| ||||||||    
T  52669627 gagagaaagttgtacaaaagttatcacaaattgtttgtacaaatatcatttctct 52669681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 54801505 - 54801559
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||| |||| ||| |||||| | ||||||||||||||||||| ||||||||    
T  54801505 gagagaaaattgtacaaaaattataataaaatgattgtacaaatatcatttctct 54801559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 961330 - 961273
Alignment:
Q  30 gagagaaagttgtt-caacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||| ||||||| ||| | |||||| ||||| ||||||||||||||||||||||||    
T  961330 gagagagagttgtttcaaaagttatcaaaaaattattgtacaaatattatttctcttt 961273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 8680994 - 8680941
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| || ||||||| |||| |||||||||||| |||||||    
T  8680994 gagagaaagttgtccaaaaaatatcacataatggttgtacaaatatcatttctc 8680941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 9032833 - 9032780
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| | || ||||||| ||||||||||||||| |||||||    
T  9032833 gagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 9032780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 29384215 - 29384268
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||||| || |||| ||| ||| ||||||||||||||| |||||||    
T  29384215 gagagaaagttgttaaaaaattgtcataaagtgattgtacaaatatcatttctc 29384268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 33860553 - 33860613
Alignment:
Q  23 tgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||||| ||||| || || ||||| |||||||||||| |||||| ||||||||    
T  33860553 tgagtatgagagaaaattgtttaa-aagtatcaaaaaatgattgtataaatatcatttctct 33860613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 39158175 - 39158103
Alignment:
Q  16 aataatatgagtatgagaga--aagttgtt-caacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    |||||| |||||||||||||  |||||||  ||| |||||||| ||||||||||| ||||||| |||||||||    
T  39158175 aataatgtgagtatgagagagaaagttgtcacaaaaattatcaaaaaatgattgttcaaatatcatttctctt 39158103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 40258258 - 40258205
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||| ||||| |||||||| |||||| ||||| |||||| |||||||    
T  40258258 gagagaaagttattcaaaaattatcataaaatggttgtataaatatcatttctc 40258205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 42178068 - 42178121
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||| || ||||| |||| ||||| ||||||||||||||||| |||||||    
T  42178068 gagagaaaattattcaaaaattgtcacataatgattgtacaaatatcatttctc 42178121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 47105964 - 47105911
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| | |||||||||| | ||||||||||||| |||||||    
T  47105964 gagagaaagttgtacaaaagttatcacaaattaattgtacaaatatcatttctc 47105911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 5208345 - 5208401
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| | || ||||||| || |||||||||||| ||||||||||    
T  5208345 gagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcttt 5208401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 6953390 - 6953461
Alignment:
Q  16 aataatatgagtatgagag--aaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    |||||||||||||||||||  ||||||||| || | || ||||||| ||  ||||||||||| |||||||||    
T  6953390 aataatatgagtatgagagataaagttgttaaaaagttgtcacaaagtggatgtacaaatatcatttctctt 6953461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 9162096 - 9162064
Alignment:
Q  53 tcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||||||||||||| |||||||||    
T  9162096 tcacaaaatgattgtacaaatatcatttctctt 9162064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 20381405 - 20381349
Alignment:
Q  30 gagagaaagttgttc-aacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||||  || |||||||| ||||||||||| ||||||| |||||||||    
T  20381405 gagagaaagttgttataaaaattatcaaaaaatgattgttcaaatataatttctctt 20381349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 28203440 - 28203392
Alignment:
Q  35 aaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||  || |||||| ||||||||||||||||||||| |||||||    
T  28203440 aaagttgtcaaaaaattattacaaaatgattgtacaaatatcatttctc 28203392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 30866405 - 30866353
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||  || | |||||| ||||||||||||||||||| |||||||    
T  30866405 agagaaagttgtcaaaaatttatcataaaatgattgtacaaatatcatttctc 30866353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 31221466 - 31221410
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||  || | || ||||||| ||||||||||||||| ||||||||||    
T  31221466 gagagaaagttgtataaaagttgtcacaaattgattgtacaaatatcatttctcttt 31221410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 31559577 - 31559537
Alignment:
Q  44 caacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||| ||||||| ||||||||||||||||||| ||||||||    
T  31559577 caactattatcaaaaaatgattgtacaaatatcatttctct 31559537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 31804365 - 31804401
Alignment:
Q  48 aattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  31804365 aattatcacaaagtgattgtacaaatatcatttctct 31804401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 32901381 - 32901329
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||| ||| |||||||| |||||  |||||||||||| |||||||    
T  32901381 agagaaagttgtgcaaaaattatcaaaaaatagttgtacaaatatcatttctc 32901329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 52487287 - 52487347
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttcaaa 90  Q
    ||||||||||| | ||| |||||||||||| |  |||||||||||| |||| |||||||||    
T  52487287 gagagaaagttatacaaaaattatcacaaattagttgtacaaatatcatttatctttcaaa 52487347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 27352683 - 27352626
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttc 87  Q
    ||||||||||||| ||| | ||||||||||||| |||||||||||| |||||||||||    
T  27352683 gagagaaagttgtccaaaagttatcacaaaatggttgtacaaatatcatttctctttc 27352626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 36669379 - 36669443
Alignment:
Q  23 tgagtatgagagaaa--gttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    |||||||||||||||  ||||| ||| |||||||||||| ||||||||||||||| |||||||||    
T  36669379 tgagtatgagagaaaaagttgtacaaaaattatcacaaattgattgtacaaatatcatttctctt 36669443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 23554819 - 23554749
Alignment:
Q  17 ataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||| |||||||||||||  |||||||| || |||||||| |||||| |||||||||||| |||||||||    
T  23554819 ataatgtgagtatgagagataaagttgtttaaaaattatcaaaaaatggttgtacaaatatcatttctctt 23554749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 835942 - 835869
Alignment:
Q  14 aaaataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||| ||||||||||  ||||||| ||| |||| | ||||||||||||||||||||| |||| ||||    
T  835942 aaaataatatgtgtatgagagagaaagttgtacaaaaattgtaacaaaatgattgtacaaatatcatttatctt 835869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 3919353 - 3919300
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| |||||| |||||||| |||||||||||| |||||||    
T  3919353 gagagaaagttgtccaaaaattataacaaaatggttgtacaaatatcatttctc 3919300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 26839448 - 26839391
Alignment:
Q  17 ataatatgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaata 74  Q
    ||||| |||||||||||||||||||| ||| | |||||| |||||| |||||||||||    
T  26839448 ataatgtgagtatgagagaaagttgtacaaaagttatcataaaatggttgtacaaata 26839391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 13362624 - 13362676
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct 82  Q
    |||||||||||||| || |||| ||||||||| |||| |||||||||||||||    
T  13362624 gagagaaagttgtttaaaaattgtcacaaaataattgaacaaatattatttct 13362676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 16479978 - 16479922
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| |||||||||| ||||||| ||||||||| |||| |||||    
T  16479978 gagagaaagttgtccaaaaattatcacataatgattatacaaatatcatttatcttt 16479922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 47113327 - 47113271
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||| |||| |||||    
T  47113327 gagagaaagttgtccaaaaattattgcaaaatgattgtacaaatatcatttatcttt 47113271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 11097902 - 11097957
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||||||| | || ||||||||||  ||||||||||| |||||||||    
T  11097902 gagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctctt 11097957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 26547287 - 26547232
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||||||| |||| |||||||||   ||||||||||| |||||||||    
T  26547287 gagagaaagttgttcaaaaattgtcacaaaatatatgtacaaatatcatttctctt 26547232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 29489377 - 29489432
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||||||| | | | ||||||||||||| |||||||||||| |||||||||    
T  29489377 gagagaaagttgtaccaaagttatcacaaaatggttgtacaaatatcatttctctt 29489432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 83
Target Start/End: Original strand, 42299222 - 42299257
Alignment:
Q  48 aattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||||| ||||||||||||||||||||    
T  42299222 aattatcacaaaatggttgtacaaatattatttctc 42299257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 43755681 - 43755751
Alignment:
Q  17 ataatatgagtatga--gagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    |||||||||||||||  |||||| ||||  || |||||||| |||||| |||||||||||| |||||||||    
T  43755681 ataatatgagtatgaaagagaaaattgtcaaaaaattatcataaaatggttgtacaaatatcatttctctt 43755751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 586952 - 586898
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||| ||||||||  || |||||||||||| ||||||||||||||| ||||||||    
T  586952 gagaaaaagttgtctaaaaattatcacaaagtgattgtacaaatatcatttctct 586898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 1690476 - 1690438
Alignment:
Q  53 tcacaaaatgattgtacaaatattatttctctttcaaat 91  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  1690476 tcacaaaatggttgtacaaatattatttctctttaaaat 1690438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 26101462 - 26101393
Alignment:
Q  17 ataatatgagtatgagagaaagt--tgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||||||||| ||   | | ||| |||||||||||||| ||||||||||||| ||||||||    
T  26101462 ataatatgagtatgagagatagagatatccaaaaattatcacaaaataattgtacaaatatcatttctct 26101393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 26501348 - 26501294
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||| ||| | |||| |||||||| |||||||||||| ||||||||    
T  26501348 gagagaaagttgtccaaaagttattacaaaatggttgtacaaatatcatttctct 26501294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 32883004 - 32882943
Alignment:
Q  23 tgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    ||||||||| ||||||||||| || |||| ||| |||||| |||||||||||||||| |||||    
T  32883004 tgagtatgaaagaaagttgtttaa-aattgtcataaaatggttgtacaaatattattactctt 32882943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 34157856 - 34157806
Alignment:
Q  33 agaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||| ||| |||||||||||||| ||| ||||||||| |||||||    
T  34157856 agaaagttgtccaaaaattatcacaaaataattatacaaatatcatttctc 34157806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 34941938 - 34941992
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||||||||  || |||| |||||||||||| |||||||||| ||||||||    
T  34941938 gagagaaagttgtctaaaaattgtcacaaaatgatagtacaaatatcatttctct 34941992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 39128463 - 39128409
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||| ||| ||||||  |||||| ||||||||||||| ||||||||    
T  39128463 gagagaaagttgtccaaaaattattgcaaaataattgtacaaatataatttctct 39128409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 43457837 - 43457891
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||| ||| | ||||| ||||||| |||||||||||| ||||||||    
T  43457837 gagagaaagttgtccaaaagttatcgcaaaatggttgtacaaatatcatttctct 43457891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 49699773 - 49699823
Alignment:
Q  33 agaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||| || |||||||| |||||| |||||||||||| |||||||    
T  49699773 agaaagttgttaaaaaattatcataaaatggttgtacaaatatcatttctc 49699823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 2177275 - 2177328
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||||||||   || |||||||||||||| |||||||| |||||||    
T  2177275 gagagaaagttgttcaaatcttgtcacaaaatgattggacaaatatcatttctc 2177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 4604597 - 4604532
Alignment:
Q  17 ataatatgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct 82  Q
    ||||| ||||||||||||||| ||||  || |||| ||||||  || |||||||||||||||||||    
T  4604597 ataatgtgagtatgagagaaaattgtctaaaaattgtcacaaggtggttgtacaaatattatttct 4604532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 25995513 - 25995460
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| | || ||||||| ||||||||||||||| |||||||    
T  25995513 gagagaaagttgtacaaaacttgtcacaaattgattgtacaaatatcatttctc 25995460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 28907610 - 28907553
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttc 87  Q
    |||||||  |||||||| |||| ||||| |||||| ||||||||||||| ||||||||    
T  28907610 gagagaagattgttcaaaaattgtcacagaatgatcgtacaaatattatctctctttc 28907553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 32938912 - 32938859
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||||| || |||| ||||||| | ||||||||||||| |||||||    
T  32938912 gagagaaagttgttaaaaaattgtcacaaattaattgtacaaatatcatttctc 32938859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 41885789 - 41885717
Alignment:
Q  17 ataatatgagtatgagag--aaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttc 87  Q
    ||||| ||||||||||||  ||| ||||  || || ||||||||||| ||||||||||||| |||||||||||    
T  41885789 ataatgtgagtatgagagtgaaaattgtataaaaactatcacaaaataattgtacaaatatcatttctctttc 41885717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 49621416 - 49621363
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||||  || |||||| |||||||| |||||||||||| |||||||    
T  49621416 gagagaaagttgtctaaaaattattacaaaatggttgtacaaatatcatttctc 49621363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 86
Target Start/End: Complemental strand, 50797821 - 50797788
Alignment:
Q  53 tcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||||||||||||| ||||||||||    
T  50797821 tcacaaaatgattgtacaaatatcatttctcttt 50797788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 51172304 - 51172373
Alignment:
Q  11 aataaaataatatgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattattt 80  Q
    ||||| ||||| ||||||||||||||||||||| || | || |||| || || |||||||||||| ||||    
T  51172304 aataatataatgtgagtatgagagaaagttgtttaaaagttgtcacgaagtggttgtacaaatatcattt 51172373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 1156532 - 1156476
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||  || ||||||  |||||||| ||||||||||| ||||||||||    
T  1156532 gagagaaagttgtcaaaaaattattgcaaaatgaatgtacaaatataatttctcttt 1156476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 5043144 - 5043100
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatat 75  Q
    |||||||||| || || |||||||||||||| |||||||||||||    
T  5043144 agagaaagttatttaaaaattatcacaaaataattgtacaaatat 5043100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 7078518 - 7078574
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||||||| | || |||||||||   ||||||||||| ||||||||||    
T  7078518 gagagaaagttgttcaaaagttgtcacaaaatagatgtacaaatatcatttctcttt 7078574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 11038330 - 11038259
Alignment:
Q  17 ataatatgagtatga--gagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||| |||||||||  ||||||||||| ||| ||||||  ||||||| ||||| |||||| ||||||||||    
T  11038330 ataatgtgagtatgaaagagaaagttgtacaaaaattataccaaaatggttgtataaatatcatttctcttt 11038259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 41029034 - 41029066
Alignment:
Q  50 ttatcacaaaatgattgtacaaatattatttct 82  Q
    |||||||||||||||||||||||||| ||||||    
T  41029034 ttatcacaaaatgattgtacaaatatcatttct 41029066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 42256513 - 42256457
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| | | | || |||||||||| |||||||||||| ||||||||||    
T  42256513 gagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctcttt 42256457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 52715031 - 52714979
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct 82  Q
    |||||||||||||  || | || ||||||||||||||||||||||| ||||||    
T  52715031 gagagaaagttgtaaaaaagttgtcacaaaatgattgtacaaatatcatttct 52714979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 7144645 - 7144574
Alignment:
Q  17 ataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||||||||  |||||||| || | |||||| |||||| |||||||||||| ||||||||||    
T  7144645 ataatatgagtatgagagagaaagttgtttaaaagttatcataaaatggttgtacaaatatcatttctcttt 7144574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 38501011 - 38500940
Alignment:
Q  17 ataatatgagtatga--gagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||||  |||||||||||  || |||| |||||||||| |||||||||||| ||||||||||    
T  38501011 ataatatgagtatgaaagagaaagttgtcaaaaaattgtcacaaaatggttgtacaaatatcatttctcttt 38500940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 27440532 - 27440479
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||| |||||||| | || ||||||||||||||||||||||| |||||||    
T  27440532 gagagaaaattgttcaaaagttgtcacaaaatgattgtacaaatatcatttctc 27440479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 6538922 - 6538870
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||  || |||||||||||||| ||||||||||||| |||||||    
T  6538922 agagaaagttgtcaaaaaattatcacaaaataattgtacaaatatcatttctc 6538870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 31626079 - 31626150
Alignment:
Q  17 ataatatgagtatgagagaaa--gttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||| ||||||||||| |||  ||||| ||| ||||||  |||||||||||||||||||| ||||||||||    
T  31626079 ataatgtgagtatgagataaaaagttgtacaaaaattataccaaaatgattgtacaaatatcatttctcttt 31626150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 36581470 - 36581536
Alignment:
Q  19 aatatgagtat--gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||||||  |||||||||||||  || |||||||||||| || |||||||||||| |||||||    
T  36581470 aatatgagtataagagagaaagttgtctaaaaattatcacaaagtggttgtacaaatatcatttctc 36581536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 2050981 - 2050915
Alignment:
Q  29 tgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctttcaaataaac 95  Q
    ||||| |||||||| ||| |||| | |||||||| |||||||||||| ||||||||  |||||||||    
T  2050981 tgagataaagttgtccaaaaattgttacaaaatggttgtacaaatatcatttctctaacaaataaac 2050915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 7927390 - 7927352
Alignment:
Q  48 aattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  7927390 aattatcacaaaatgattgtataaatatcatttctcttt 7927352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 14914424 - 14914370
Alignment:
Q  31 agagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctctt 85  Q
    |||||||||||| ||| | || |||||||||| |||||||||||| |||||||||    
T  14914424 agagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctctt 14914370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 22402629 - 22402698
Alignment:
Q  17 ataatatgagtatgagagaaa--gttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||||||||||||||||  ||||||||| | || ||||||||| | ||| ||||||| ||||||||    
T  22402629 ataatatgagtatgagagaaaatgttgttcaaaagttgtcacaaaataaatgttcaaatatcatttctct 22402698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 27005497 - 27005551
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||| |||||||| ||| |||||||| ||||| ||||||||||||| ||||||||    
T  27005497 gagataaagttgtacaaaaattatcaaaaaataattgtacaaatatcatttctct 27005551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 17063933 - 17063865
Alignment:
Q  17 ataatatgagtatgagaga--aagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||| |||||||||||||  |||||||| || | || ||| ||||||||||||||||||| |||||||    
T  17063933 ataatgtgagtatgagagataaagttgtttaaaagttgtcaaaaaatgattgtacaaatatcatttctc 17063865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 22920510 - 22920563
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| | || | |||||||| ||||||||||||||||||||    
T  22920510 gagagaaagttgtccaaaatttgttacaaaatggttgtacaaatattatttctc 22920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 38010925 - 38010872
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    |||||||| |||| ||| | |||||||||| ||||||||||||||| |||||||    
T  38010925 gagagaaaattgtacaaaagttatcacaaattgattgtacaaatatcatttctc 38010872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 34400671 - 34400619
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttct 82  Q
    ||||||| |||||| || |||| ||| ||||||||||||||||||| ||||||    
T  34400671 gagagaaggttgttaaaaaattgtcataaaatgattgtacaaatatcatttct 34400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 35098735 - 35098806
Alignment:
Q  17 ataatatgagtatgagagaaag--ttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||||||||||   ||||| ||   |||||| |||||| |||||||||||| ||||||||||    
T  35098735 ataatatgagtatgagagaaaaaattgtttaaatgttatcaaaaaatggttgtacaaatatcatttctcttt 35098806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 35814515 - 35814452
Alignment:
Q  23 tgagtatgaga--gaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    |||||||||||  ||||||||| | | | ||||||||||||| |||||||||||| ||||||||    
T  35814515 tgagtatgagaaagaaagttgtaccaaagttatcacaaaatggttgtacaaatatcatttctct 35814452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 8310 - 8381
Alignment:
Q  17 ataatatgagtatgagagaaa--gttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||||||||||||||||||  |||||| |  | || |||||||||| |||||||||||| ||||||||||    
T  8310 ataatatgagtatgagagaaacagttgttaagaagttgtcacaaaatggttgtacaaatataatttctcttt 8381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 249160 - 249214
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctct 84  Q
    ||||||||||||| ||| | |||||||||| ||||||| ||||||| ||||||||    
T  249160 gagagaaagttgtacaaaagttatcacaaattgattgtgcaaatatcatttctct 249214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 18555 - 18526
Alignment:
Q  54 cacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||||||||||||||||||||    
T  18555 cacaaaatgattgtacaaatattatttctc 18526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 36071 - 35999
Alignment:
Q  16 aataatatgagtat--gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctcttt 86  Q
    |||||| |||||||  |||||||||||||  || |||||||||||| |  |||||||||||| ||||||||||    
T  36071 aataatgtgagtataagagagaaagttgtcaaaaaattatcacaaagtagttgtacaaatatcatttctcttt 35999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 18648 - 18595
Alignment:
Q  30 gagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||| ||| | |||||||||| || |||||||||||| |||||||    
T  18648 gagagaaagttgtacaaaagttatcacaaattggttgtacaaatatcatttctc 18595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 4074 - 4038
Alignment:
Q  50 ttatcacaaaatgattgtacaaatattatttctcttt 86  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  4074 ttatcacaaaatggttgtacaaatatcatttctcttt 4038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 72180 - 72240
Alignment:
Q  23 tgagtatgagagaaagttgttcaacaattatcacaaaatgattgtacaaatattatttctc 83  Q
    ||||||||||||||||||||  || | || | |||||||| |||||||||||| |||||||    
T  72180 tgagtatgagagaaagttgtctaaaagttgttacaaaatggttgtacaaatatcatttctc 72240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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