View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_25 (Length: 357)
Name: NF18537_low_25
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 12 - 350
Target Start/End: Original strand, 8491199 - 8491537
Alignment:
| Q |
12 |
atgaattgaatagaacttgaaaacaaatgtaaaccattgtcatataaaagtttcatataaataaatggggcaaaaggatctcaaaataatacccaagtag |
111 |
Q |
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| T |
8491199 |
atgaattgaatagaacttgaaaacaaatgtaaaccattgtcatataaaagtttcatataaataaatggggcaaaaggatctcaaaataatacccaagtag |
8491298 |
T |
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| Q |
112 |
tttcgaacaaacaaggaatcaaacaaaattacaaaatcttgcaacaaaataaaaccctaagaatctcttcaaatagtcttataagttaatcagccttagc |
211 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8491299 |
tttcgaacaaacaaggaatcaaacaaaatttcaaaatcttgcaacaaaataaaaccctaagaatctcttcaaatagtctaataagttaatcagccttagc |
8491398 |
T |
|
| Q |
212 |
agcagcggaagcagcttgtcccctgagacgaccagttctcttagcagcaatgagaccaaccttctgtccaggaggagcatcacgcctaacagtactagca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8491399 |
agcagcggaagcagcttgtcccctgagacgaccagttctcttagcagcaatgagaccaaccttctgtccaggaggagcgtcacgcctaacagtactagca |
8491498 |
T |
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| Q |
312 |
tgtccaatatgctggtggttacctcctccgtgatgatgt |
350 |
Q |
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| T |
8491499 |
tgtccaatatgctggtggttacctcctccgtgaggatgt |
8491537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 221 - 343
Target Start/End: Complemental strand, 29063291 - 29063169
Alignment:
| Q |
221 |
agcagcttgtcccctgagacgaccagttctcttagcagcaatgagaccaaccttctgtccaggaggagcatcacgcctaacagtactagcatgtccaata |
320 |
Q |
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||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||| |
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| T |
29063291 |
agcagcttgacccctgagacgaccagtcctcttggcagcaatgagaccaaccttctgtccaggaggagcatcacgtctgacagtactcgcatgaccaata |
29063192 |
T |
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| Q |
321 |
tgctggtggttacctcctccgtg |
343 |
Q |
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|| ||||| |||||||||||||| |
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| T |
29063191 |
tgttggtgattacctcctccgtg |
29063169 |
T |
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