View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_26 (Length: 356)
Name: NF18537_low_26
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 356
Target Start/End: Complemental strand, 29607432 - 29607094
Alignment:
| Q |
18 |
aagattcgataaaagaagctttagcaagttttgccaagtcagagtacaatctgtctgataaagatcagatgacaaagattgcatgaattcgttaatgcgg |
117 |
Q |
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| T |
29607432 |
aagattcgataaaagaagctttagcaagttttgccaagtcagagtacaatctgtctgataaagatcagatgacaaagattgcatgaattcgttaatgcgg |
29607333 |
T |
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| Q |
118 |
cataatccagaccaaagaggtccgtaaatatagaattgtaacttaaagtaaaatggaaaaggatattaccgcactgggactgggtgctggtgacggtcct |
217 |
Q |
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| T |
29607332 |
catgatccagaccaaagaggtccgtaaatatagaattgtaacttaaagtaaaatggaaaaagatattaccgcactgggactgggtgctggtgacggtcct |
29607233 |
T |
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| Q |
218 |
tcatctgaactcattgtagtattatcatcagccagtggtgctgggggactcctcctaatgattgttgaacttgaacttgtaggctctggtgctagatata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29607232 |
tcatctgaactcattgtagtattatcatcagccagtggtgctgggggactcctcctaatgattgttgaacttgaacttgtaggctctggtgctagagcta |
29607133 |
T |
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| Q |
318 |
gtgcgtgatgtttcatatgcttactatgcttgtgttttc |
356 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |
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| T |
29607132 |
gtgcgtgatgtttcttatgcttactatgcttgtgttttc |
29607094 |
T |
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