View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_27 (Length: 344)
Name: NF18537_low_27
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 10421412 - 10421082
Alignment:
| Q |
1 |
gacggttaagggttcacaaaatatcaataatattacaatagcactgcataacatagatttccaagaactaatagcttaaactcaatattttattatctat |
100 |
Q |
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| T |
10421412 |
gacggttaagggttcataaaatatcaataatattacaatagcactgcataacatagatttcaaagaactaatagtttaaactcaatattttattatctaa |
10421313 |
T |
|
| Q |
101 |
c-aatcccacccaaattataagagaaagnnnnnnnctagtaa--agaaaaagatgaattacttgtcatctggatattcatatgttagagattacaacaat |
197 |
Q |
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| T |
10421312 |
caaatcccacccaaattataagagaaagaaaaaaactagtaaagagagaaagatgaattacttgtcatctggatatgcatatgttagagattacaacaat |
10421213 |
T |
|
| Q |
198 |
gtatagagtagtttagatggtgtaagttgagcctttacattaatgaggctgccacccacttaaactaactgatgatattcagaatgtaagcacagaccag |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
10421212 |
gtatagagtagtttagatggtgtaagttgagcctttacattaatgaggctgccacccacttaaactaactgatgatattcagaatataagcacagaccag |
10421113 |
T |
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| Q |
298 |
tcttcaactccaatggtcccaacatcataat |
328 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10421112 |
tcttcaactccaatggtcccaacatcataat |
10421082 |
T |
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