View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_29 (Length: 321)
Name: NF18537_low_29
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 30252391 - 30252098
Alignment:
| Q |
12 |
caacctattacaaagagattgtcgtgtagatcttattcgacatataaatttatgttgagaaaaagaccaagaataagagagatgatgagacagttcatga |
111 |
Q |
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| T |
30252391 |
caacctattacaaaaagattgtcgtgtagatcttattcgacatataaatttatgttgagaaaaagaccaagaataagagagatgatgagacagttcatga |
30252292 |
T |
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| Q |
112 |
tgaatatctatatctaatgaggtacaaaatagaacagaaagatatccatgtgttttaaatagaattttaaatccacctctgttgaaattgaaacatcaac |
211 |
Q |
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| T |
30252291 |
tgaatatctatatctaatgaggtacaaaatagagcagaaagatatccatgtgttttaaatagaattttaaatccacctctgttgaaattgaaacatcaac |
30252192 |
T |
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| Q |
212 |
ttaaagccaactctgtagcttaaacagacaactagcgaagtagaaggtgataaatcatattattaccttttgatcaattagtgccacatccatg |
305 |
Q |
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| T |
30252191 |
ttaaagcaaactatgtagcttaaacagacaactagcgaagtagaaggtgataaatcatattgttaccttttgatcaattagtgccacatccatg |
30252098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 30184524 - 30184561
Alignment:
| Q |
262 |
taaatcatattattaccttttgatcaattagtgccaca |
299 |
Q |
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| T |
30184524 |
taaaacatatttttaccttttgatcaattagtgccaca |
30184561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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