View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_30 (Length: 315)
Name: NF18537_low_30
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 26669931 - 26670230
Alignment:
| Q |
1 |
tgtagtagtacaactaaaagtattgttgatgatgttagaagatgctattcaatgggttcttaccaatatgttgttgctgattcagatttggtagtggctt |
100 |
Q |
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| T |
26669931 |
tgtagtagtacaactaaaagtattgttgatgatgtaaggagatgctattcaatgggttcttaccaatatgttgttgctgattcagatttggtagtggctt |
26670030 |
T |
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| Q |
101 |
tgtgtcctaatagaggtgagggaggaggaaatagtgctagtatgagacaattgaagggtgggttcggtcaaaatgggaattgttccattgttggtggaga |
200 |
Q |
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| T |
26670031 |
tgtgccctaataaaggtgagggaggaggaaatagtgctagtatgagacaattgaagggagggtttggtcaaaatgggaattgttccattgttggtggaga |
26670130 |
T |
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| Q |
201 |
tgttgagggg-aaaaaatgaatgttgctaggaaaggtgaaagtttttctatatcaaagatttggctttggtctaggaaggataaggtatcaagttcatca |
299 |
Q |
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| T |
26670131 |
tgttgaggggaaaaaaatgaatgttgctaggaaaggtgaaagtttttctatatcaaagatttggctttggtctaggaaggataaggtatcaagttcatca |
26670230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 15103393 - 15103333
Alignment:
| Q |
30 |
tgatgttagaagatgctattcaatgggttcttaccaatatgttgttgctgattcagatttg |
90 |
Q |
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| T |
15103393 |
tgatgttaggagatgttattcaatggggtcttttcaatatgttgttgctgattcagatttg |
15103333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 15103214 - 15103155
Alignment:
| Q |
223 |
ttgctaggaaaggtgaaagtttttctatatcaaagatttggctttggtctaggaaggata |
282 |
Q |
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| T |
15103214 |
ttgcaaggaaaggtgaaagtttttctgtttcaaagatttggcaatggtctaagaaagata |
15103155 |
T |
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