View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_34 (Length: 281)
Name: NF18537_low_34
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 149 - 264
Target Start/End: Complemental strand, 23669054 - 23668939
Alignment:
| Q |
149 |
atagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgttta |
248 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23669054 |
atagcaagctttcaacacttttatgtgcatatttctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaataattgttta |
23668955 |
T |
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| Q |
249 |
tatgcctcaataaatt |
264 |
Q |
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|||| ||||||||||| |
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| T |
23668954 |
tatgtctcaataaatt |
23668939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 23669184 - 23669086
Alignment:
| Q |
11 |
tagattatactataaaccaactacacttgattatttcctttttgtcttattctcccacgactaagcttccaatcctttccctcttcaatctcattcccc |
109 |
Q |
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| T |
23669184 |
tagattatactataaaccaaccacacttgattatttcctttttgtcttattctcccacgaataagcttccaatcatttccctcttcaatctcattcccc |
23669086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 5827018 - 5827099
Alignment:
| Q |
183 |
ctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgtttatatgcctcaataaatt |
264 |
Q |
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| T |
5827018 |
ctcaatcatgtagaaaccaatttgttctttcaccattctgtgttgttatattcaaataattgtctatatgtctcaataaatt |
5827099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 9369920 - 9369802
Alignment:
| Q |
146 |
acaatagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgt |
245 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9369920 |
acaatagcaagctttcaacacttttatgtgcatatttctcaatcatgtaaaaatcaatttgttccttcaccactctctattcctatatttaaataattgt |
9369821 |
T |
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| Q |
246 |
ttatatgcctcaataaatt |
264 |
Q |
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||||||| ||||||||||| |
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| T |
9369820 |
ttatatgtctcaataaatt |
9369802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 9370035 - 9369943
Alignment:
| Q |
15 |
ttatactataaaccaactacacttgattatttcctttttgtcttattctcccacgactaagcttccaatcctttccctcttcaatctcattcc |
107 |
Q |
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| T |
9370035 |
ttatattatataccaatcacatttgattattacctttttgtcttattctcccacggctaagcttccaatcctttccctcttcaatctcattcc |
9369943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 47817657 - 47817775
Alignment:
| Q |
146 |
acaatagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgt |
245 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||| |
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| T |
47817657 |
acaatagcaagctttcaacactattatgtgcagatttctcaatcatgtagaaacctatttgttcattcaccactctatgttcctatattcaaataattgt |
47817756 |
T |
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| Q |
246 |
ttatatgcctcaataaatt |
264 |
Q |
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||||||| ||||||||||| |
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| T |
47817757 |
ttatatgtctcaataaatt |
47817775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 47817534 - 47817632
Alignment:
| Q |
11 |
tagattatactataaaccaactacacttgattatttcctttttgtcttattctcccacgactaagcttccaatcctttccctcttcaatctcattcccc |
109 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47817534 |
tagatcatactataaaccaaccacacttgattatttcctttttgtcttattctcccacggctaagcttccaatcctttccctcttcaatctcattcccc |
47817632 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 26049402 - 26049288
Alignment:
| Q |
150 |
tagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgtttat |
249 |
Q |
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||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||| ||| | || ||||||||||||| ||| || |
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| T |
26049402 |
tagcaagctataaacacttttcggtgcaaatttctcaatcatgtagaaaacaatttgttctttcaccattctgtgttgttatattcaaataactgtccat |
26049303 |
T |
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| Q |
250 |
atgcctcaataaatt |
264 |
Q |
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||| ||||||||||| |
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| T |
26049302 |
atgtctcaataaatt |
26049288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 328549 - 328641
Alignment:
| Q |
146 |
acaatagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaat |
239 |
Q |
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|||||| |||||| || || ||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||| ||| | ||| ||||||||||| |
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| T |
328549 |
acaatatcaagctatccacgcttttcggtgca-attcctcaatcatatagaatccaatttgttccttcaccattctgtgttcttatattcaaat |
328641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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