View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18537_low_36 (Length: 276)

Name: NF18537_low_36
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18537_low_36
NF18537_low_36
[»] chr1 (4 HSPs)
chr1 (11-261)||(5054001-5054251)
chr1 (148-259)||(46446033-46446147)
chr1 (148-261)||(46672020-46672136)
chr1 (82-111)||(46446193-46446222)
[»] chr8 (7 HSPs)
chr8 (136-261)||(9860662-9860787)
chr8 (147-261)||(9842021-9842135)
chr8 (11-115)||(9860829-9860933)
chr8 (11-115)||(9842188-9842292)
chr8 (147-246)||(9847066-9847165)
chr8 (11-110)||(9903122-9903221)
chr8 (208-249)||(27361021-27361062)
[»] chr5 (9 HSPs)
chr5 (147-261)||(225388-225502)
chr5 (154-261)||(39572392-39572499)
chr5 (135-261)||(4146547-4146673)
chr5 (21-115)||(39576559-39576653)
chr5 (154-259)||(39576400-39576505)
chr5 (201-261)||(2326337-2326397)
chr5 (224-261)||(4100463-4100500)
chr5 (60-110)||(3561339-3561389)
chr5 (62-110)||(225560-225608)
[»] chr3 (1 HSPs)
chr3 (14-115)||(7257009-7257110)
[»] scaffold0658 (1 HSPs)
scaffold0658 (208-249)||(2835-2876)
[»] chr6 (1 HSPs)
chr6 (221-261)||(112636-112676)


Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 261
Target Start/End: Original strand, 5054001 - 5054251
Alignment:
Q  11 atgaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5054001 atgaaactaaactgttgacgtgaggccatacctcaaaattgcccatggtaatgccctcgatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 5054100  T
Q  111 tatgtgtttgatgtctcttccaagtagagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5054101 tatgtgtttgatgtctcttccaagtagagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaagtatcaagctcatgaccg 5054200  T
Q  211 caagcagcaacataatcaaaaggtcccatctcatgataatgagaccatttt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054201 caagcagcaacataatcaaaaggtcccatctcatgataatgagaccatttt 5054251  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 46446147 - 46446033
Alignment:
Q  148 aagatgatttgatcgttgatccacaaacgaaataccac---atacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcat 244  Q
    ||||||||||||||||||| ||| ||||||||||||||   | ||||| ||| |||||||||||| || ||||| |||||||||||| ||||||||||||    
T  46446147 aagatgatttgatcgttgacccaaaaacgaaataccaccgaagacaaattattaagctcatgaccacaggcagccacataatcaaaatgtcccatctcat 46446048  T
Q  245 gataatgagaccatt 259  Q
    ||||| |||||||||    
T  46446047 gataaagagaccatt 46446033  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 46672020 - 46672136
Alignment:
Q  148 aagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaa---gcagcaacataatcaaaaggtcccatctcat 244  Q
    ||||| |||| ||||||||||||||| | ||||||||   | ||||| ||||||| |||||| |||   ||||| |||||||||||| |||||||| |||    
T  46672020 aagataatttaatcgttgatccacaagcaaaataccaacgaaaaaatttcaagcttatgaccacaacaagcagccacataatcaaaatgtcccatcgcat 46672119  T
Q  245 gataatgagaccatttt 261  Q
    ||||  |||||||||||    
T  46672120 gatagagagaccatttt 46672136  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 46446222 - 46446193
Alignment:
Q  82 tgtttggtcttgacattgtaaccaaaatgt 111  Q
    ||||||||||||||||||||||||||||||    
T  46446222 tgtttggtcttgacattgtaaccaaaatgt 46446193  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 136 - 261
Target Start/End: Complemental strand, 9860787 - 9860662
Alignment:
Q  136 agagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtc 235  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||| | |||||| ||||| |||||||  ||||||||||||||||    
T  9860787 agagctactttaaagataatttgatggttgatccacaaacgaaatgccacaaacaaaatctgaagctcttgaccacaagcagacacataatcaaaaggtc 9860688  T
Q  236 ccatctcatgataatgagaccatttt 261  Q
    |||||||||||||| |||||||||||    
T  9860687 ccatctcatgataaagagaccatttt 9860662  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 9842135 - 9842021
Alignment:
Q  147 aaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatga 246  Q
    |||||| ||||||||||||||||||||||||||   ||||| |  | ||| ||||  |||||| |||||||  |||||||||||||||||||||||||||    
T  9842135 aaagataatttgatcgttgatccacaaacgaaacttcacatccgtagtattaagcctatgaccacaagcagacacataatcaaaaggtcccatctcatga 9842036  T
Q  247 taatgagaccatttt 261  Q
    | | |||||||||||    
T  9842035 tgaagagaccatttt 9842021  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 9860933 - 9860829
Alignment:
Q  11 atgaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 110  Q
    |||||||||||||||||| ||||| ||||||||||||||  ||||    ||||||||| ||| ||||||| ||| | || ||||||||||||||||||||    
T  9860933 atgaaactaaactgttaatgtgagaccatacctcaaaatcacccacatcaatgccctcgatcattgtcaattgtctagttttgacattgtaaccaaaatg 9860834  T
Q  111 tatgt 115  Q
     ||||    
T  9860833 aatgt 9860829  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 9842292 - 9842188
Alignment:
Q  11 atgaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 110  Q
    ||||||||| |||||||  |||| | ||||| ||||| ||||| | |  |||| |||||||||||||||| ||  ||||||| |||||||||||||||||    
T  9842292 atgaaactagactgttagtgtgaagacatacttcaaagttgccaacgtcaatgtcctcaatctttgtcaattgcctggtcttcacattgtaaccaaaatg 9842193  T
Q  111 tatgt 115  Q
    |||||    
T  9842192 tatgt 9842188  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 9847165 - 9847066
Alignment:
Q  147 aaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatga 246  Q
    |||||| |||||||| |||||||| |||||||||||||||  || ||||||||   || |||| |||||| | | | || |||||||| |||||||||||    
T  9847165 aaagataatttgatcattgatccaaaaacgaaataccacactcataatatcaataccaggaccacaagcacccatacaaacaaaaggttccatctcatga 9847066  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 9903221 - 9903122
Alignment:
Q  11 atgaaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 110  Q
    ||||||||| |||||||  ||||  |||||| | |||||  |||| |  |||| ||||||||||| |||| ||||||||||| |||||||||| ||||||    
T  9903221 atgaaactagactgttagtgtgaaaccatactttaaaatctcccacgtcaatgtcctcaatctttatcaattgtttggtcttcacattgtaacaaaaatg 9903122  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 27361062 - 27361021
Alignment:
Q  208 ccgcaagcagcaacataatcaaaaggtcccatctcatgataa 249  Q
    |||||||||||  | |||||||||||||||||||||||||||    
T  27361062 ccgcaagcagcctcgtaatcaaaaggtcccatctcatgataa 27361021  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 225502 - 225388
Alignment:
Q  147 aaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatga 246  Q
    |||||||||||||||||||||||||||||||||| ||||| | ||||||  |||| || |||||||| |||| |||||| |||||||||  |||||||||    
T  225502 aaagatgatttgatcgttgatccacaaacgaaatgccacacaaaaaatactaagcccacgaccgcaaacagccacataaccaaaaggtcagatctcatga 225403  T
Q  247 taatgagaccatttt 261  Q
    ||| |||||||||||    
T  225402 taaagagaccatttt 225388  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 39572499 - 39572392
Alignment:
Q  154 atttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgag 253  Q
    ||||||||||||||||| | || ||||| | ||  || |||||||||||  | ||| ||||||||||||||||||||||||||||||||||||||| |||    
T  39572499 atttgatcgttgatccatagacaaaatatctcaatcataatatcaagctggttaccacaagcagcaacataatcaaaaggtcccatctcatgataaggag 39572400  T
Q  254 accatttt 261  Q
    ||||||||    
T  39572399 accatttt 39572392  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 135 - 261
Target Start/End: Complemental strand, 4146673 - 4146547
Alignment:
Q  135 tagagatactttaaagatgatttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggt 234  Q
    ||||||||||  || ||| ||||||| ||||||||| |||| ||| |||||| ||| ||||| || |||||| ||||||||||    | |||||||||||    
T  4146673 tagagatactcgaaggataatttgatggttgatccagaaacaaaacaccacacacagaatatgaatctcatggccgcaagcagtcggaaaatcaaaaggt 4146574  T
Q  235 cccatctcatgataatgagaccatttt 261  Q
    ||||||||||||||| |||||||||||    
T  4146573 cccatctcatgataaagagaccatttt 4146547  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 39576653 - 39576559
Alignment:
Q  21 actgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtatgt 115  Q
    |||||||  |||| ||||||| |||||||  |||  || ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  39576653 actgttagtgtgaagccatacttcaaaatcacccgaggcaatgccctcaatctttgtcaattgtttggtcttgacattgtaactaaaatgtatgt 39576559  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 259
Target Start/End: Complemental strand, 39576505 - 39576400
Alignment:
Q  154 atttgatcgttgatccacaaacgaaataccacatacaaaatatcaagctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgag 253  Q
    |||||||||||||||||||||||||||| | ||  || ||||| |||||  | ||| | ||||||||||||||  ||||||||||||||||||||| |||    
T  39576505 atttgatcgttgatccacaaacgaaatatcgcactcataatattaagctggttaccactagcagcaacataattgaaaggtcccatctcatgataaagag 39576406  T
Q  254 accatt 259  Q
    ||||||    
T  39576405 accatt 39576400  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 2326337 - 2326397
Alignment:
Q  201 ctcatgaccgcaagcagcaacataatcaaaaggtcccatctcatgataatgagaccatttt 261  Q
    ||||||||| |||| ||| ||||||||||| |||||||||||||||||| ||||| |||||    
T  2326337 ctcatgaccacaagtagccacataatcaaatggtcccatctcatgataaagagacaatttt 2326397  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 4100463 - 4100500
Alignment:
Q  224 aatcaaaaggtcccatctcatgataatgagaccatttt 261  Q
    |||||||||||||||||||||||||| |||||||||||    
T  4100463 aatcaaaaggtcccatctcatgataaagagaccatttt 4100500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 3561339 - 3561389
Alignment:
Q  60 aatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 110  Q
    ||||||||| |||||||||||  || | |||||||||||||||||||||||    
T  3561339 aatgccctctatctttgtcaatcgtctagtcttgacattgtaaccaaaatg 3561389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 225608 - 225560
Alignment:
Q  62 tgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatg 110  Q
    ||||||||||||||||||  ||| | |||||||||||||||| ||||||    
T  225608 tgccctcaatctttgtcagttgtctagtcttgacattgtaactaaaatg 225560  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 7257110 - 7257009
Alignment:
Q  14 aaactaaactgttaacgtgaggccatacctcaaaattgcccatggtaatgccctcaatctttgtcaaatgtttggtcttgacattgtaaccaaaatgtat 113  Q
    |||||| |||||||  ||||| |||||| ||||||||||||||   |||| |||||||||| ||||| ||  ||||||| ||||| |||||||||| |||    
T  7257110 aaactagactgttagtgtgagaccatacttcaaaattgcccattccaatgtcctcaatcttagtcaattgcctggtcttcacattataaccaaaatatat 7257011  T
Q  114 gt 115  Q
    ||    
T  7257010 gt 7257009  T

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Target: scaffold0658 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 2835 - 2876
Alignment:
Q  208 ccgcaagcagcaacataatcaaaaggtcccatctcatgataa 249  Q
    |||||||||||  | |||||||||||||||||||||||||||    
T  2835 ccgcaagcagcctcgtaatcaaaaggtcccatctcatgataa 2876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 112636 - 112676
Alignment:
Q  221 cataatcaaaaggtcccatctcatgataatgagaccatttt 261  Q
    ||||||||||||| ||||||||||||||| ||| |||||||    
T  112636 cataatcaaaaggccccatctcatgataaagagtccatttt 112676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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