View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_38 (Length: 254)
Name: NF18537_low_38
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_38 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 8178268 - 8178029
Alignment:
| Q |
15 |
tattcacacatgaacaagtaaacaaaccaaaaagcagtgaactattcttactcttctgagatatcttgcacggatccaactcggagtggcatgaagtgga |
114 |
Q |
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| T |
8178268 |
tattcacacatgaacaagtaaacaaaccaaaaagcagtgaactattcttactcttctgagatatcttgcacggatccaactcggagtggcatgaagtgga |
8178169 |
T |
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| Q |
115 |
ggccttccttccactgcccttgtcattatgtgtgttgatggcaatgctgaaactactctcacatcatttgcaaggactcttttgaagtgttctagatcaa |
214 |
Q |
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| T |
8178168 |
ggtcttccttctactggccttgtcattatgtgtgttgatggcaatgctgaaaccactctcacatcatttgcaaggactcttttgaagtgttctagatcaa |
8178069 |
T |
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| Q |
215 |
atatgtcaccaaattcactgcaaccaaagcaaagcaatga |
254 |
Q |
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| T |
8178068 |
atatgtcaccaaattcactgcaaccaaagcaaagcaatga |
8178029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 39830282 - 39830182
Alignment:
| Q |
15 |
tattcacacatgaacaagtaaacaaaccaaaaagcagtgaactattcttactcttctgagatatcttgcacggatccaactcggagtggcatgaagtgga |
114 |
Q |
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| T |
39830282 |
tattcacacaggaacaagtaaacaaaccaaaaaacagtgaactattcttactcttctgagatatcttgcacggatccaactgggagtggcatgaagtgga |
39830183 |
T |
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| Q |
115 |
g |
115 |
Q |
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| T |
39830182 |
g |
39830182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 60 - 237
Target Start/End: Complemental strand, 7748274 - 7748097
Alignment:
| Q |
60 |
tcttactcttctgagatatcttgcacggatccaactcggagtggcatgaagtggaggccttccttccactgcccttgtcattatgtgtgttgatggcaat |
159 |
Q |
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|||||||||| ||||||| | | |||||||||||| |||||| ||||||| ||||| ||||| ||||||| | ||||||| | |||||||||||||||| |
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| T |
7748274 |
tcttactcttttgagatagcgcgaacggatccaacttggagtgacatgaaggggagggcttccctccactggctttgtcatcaagtgtgttgatggcaat |
7748175 |
T |
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| Q |
160 |
gctgaaactactctcacatcatttgcaaggactcttttgaagtgttctagatcaaatatgtcaccaaattcactgcaa |
237 |
Q |
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| T |
7748174 |
gacgaaaccacccgcacatcattggcaagaacattcttgaagtgctcaaaatcaaatatatcagcaaattcactgcaa |
7748097 |
T |
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