View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18537_low_4 (Length: 608)

Name: NF18537_low_4
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18537_low_4
NF18537_low_4
[»] chr8 (4 HSPs)
chr8 (1-438)||(34985641-34986077)
chr8 (318-409)||(44931204-44931295)
chr8 (316-410)||(38476247-38476341)
chr8 (290-370)||(28212863-28212944)
[»] chr5 (3 HSPs)
chr5 (317-394)||(31662670-31662747)
chr5 (307-373)||(24346748-24346814)
chr5 (314-370)||(26137127-26137183)
[»] chr7 (2 HSPs)
chr7 (307-370)||(40991755-40991818)
chr7 (301-334)||(42985128-42985161)
[»] chr4 (1 HSPs)
chr4 (316-471)||(25323818-25323974)
[»] chr6 (1 HSPs)
chr6 (301-390)||(12699708-12699797)
[»] chr3 (1 HSPs)
chr3 (307-408)||(44576266-44576367)


Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 34986077 - 34985641
Alignment:
Q  1 caacaaattagatataaactattagtgagatgaaattgctcaacacaattcacggtcaaaatattttgttaactattttcaaatttcatagtgtaaatac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  34986077 caacaaattagatataaactattagtgagatgaaattgctcaacacaattcacggtcaaaatatt--gttaactattttcaaatttcatagtgtaaatac 34985980  T
Q  101 caactcctacaaggtgaattggtgatttgctannnnnnnnnnnnn-aagtatgtgtgtgattaaataaaaagtaattttaattgataaaaatgttgaaat 199  Q
    ||||||| ||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34985979 caactccaacaaggtgaattggtgatttgctattttttttttttttaagtatgtgtgtgattaaataaaaagtaattttaattgataaaaatgttgaaat 34985880  T
Q  200 tattaaggacgtgcatagcctagaattgattttttaaaatgataagctaaaatggatgtgaacacgtccatgtgagcataatttgattgataaatatttt 299  Q
    |||| |||||||||||||| | ||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  34985879 tattgaggacgtgcatagcgtggaattgatttttttaaatgataagttaaaatgggtgtgagcacgtccatgtgagcataatttgattgataaatatttt 34985780  T
Q  300 aaaattatggttgtgtctaacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaatacttatttaggccatctctcaacagatg 399  Q
    |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| || |    
T  34985779 aaaattatagttgtgtctaacacaacctcacaaaatcgatctatgagacgagaattacctccatttataaatacttatcgaggccatctctcaaccgacg 34985680  T
Q  400 cgagactcttctaacacctcttatgcccaacactattgg 438  Q
     ||||||||| ||||||| ||||||||||||||||||||    
T  34985679 tgagactcttttaacaccccttatgcccaacactattgg 34985641  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 409
Target Start/End: Original strand, 44931204 - 44931295
Alignment:
Q  318 aacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaatacttatttaggccatctctcaacagatgcgagactctt 409  Q
    |||||| ||| ||||||||||  | |||| |||| ||| |||||| ||||||| ||||||| ||||||||||||||| |||| | |||||||    
T  44931204 aacacatccttacaaaaccggcttgtgaggcgaggattgcccccacttataaacacttattcaggccatctctcaaccgatgtgggactctt 44931295  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 410
Target Start/End: Complemental strand, 38476341 - 38476247
Alignment:
Q  316 ctaacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaatacttatttaggccatctctcaacagatgcgagactcttc 410  Q
    ||||||||||| ||||||| |||  | ||||  ||| ||| |||||| ||||||| ||||||| ||||||||||||||| |||| | ||||||||    
T  38476341 ctaacacaaccccacaaaatcggcttgtgaggtgaggatttcccccacttataaacacttattcaggccatctctcaactgatgtgggactcttc 38476247  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 370
Target Start/End: Original strand, 28212863 - 28212944
Alignment:
Q  290 taaatattttaaaatta-tggttgtgtctaacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaa 370  Q
    |||||||||||||| |  |||||| || ||||||||| ||| ||||| ||| ||||||| ||||||||||| ||||||||||    
T  28212863 taaatattttaaaaatcgtggttgagtttaacacaacttcataaaactggtttatgagatgagaattaccctcatttataaa 28212944  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 394
Target Start/End: Original strand, 31662670 - 31662747
Alignment:
Q  317 taacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaatacttatttaggccatctctcaac 394  Q
    ||||||||||||||||||||||| | |||| |||| ||  | |||||||||||| ||||||| | | |||||||||||    
T  31662670 taacacaacctcacaaaaccggtttgtgaggcgaggatagcacccatttataaacacttattcacgtcatctctcaac 31662747  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 24346748 - 24346814
Alignment:
Q  307 tggttgtgtctaacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaatac 373  Q
    |||||| ||||||||||||| |||||||||||  | ||||  ||| |||||||||| ||||||||||    
T  24346748 tggttgggtctaacacaaccccacaaaaccggcttgtgaggtgagtattacccccacttataaatac 24346814  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 26137127 - 26137183
Alignment:
Q  314 gtctaacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaa 370  Q
    |||||||| |||| |||||||||||| | ||||| ||| ||| ||||||||||||||    
T  26137127 gtctaacataaccccacaaaaccggtttgtgagatgaggattgcccccatttataaa 26137183  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 370
Target Start/End: Original strand, 40991755 - 40991818
Alignment:
Q  307 tggttgtgtctaacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaa 370  Q
    |||||| ||||||||||||||||||||||| |  | ||||| ||| |||||||||| |||||||    
T  40991755 tggttgagtctaacacaacctcacaaaaccagattgtgagatgaggattacccccacttataaa 40991818  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 42985128 - 42985161
Alignment:
Q  301 aaattatggttgtgtctaacacaacctcacaaaa 334  Q
    |||||||||||| |||||||||||||||||||||    
T  42985128 aaattatggttgagtctaacacaacctcacaaaa 42985161  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 316 - 471
Target Start/End: Original strand, 25323818 - 25323974
Alignment:
Q  316 ctaacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaatacttatttaggccatctctcaacagatgcgagactcttctaaca 415  Q
    ||||||||||| ||||||||||| ||  |||  ||| ||| ||||||  |||||| |||| || ||| ||||||||||| |||| | | ||||| |||||    
T  25323818 ctaacacaaccccacaaaaccggcctgcgaggtgaggattgcccccacgtataaacacttgttcaggtcatctctcaaccgatgtggggctctt-taaca 25323916  T
Q  416 --cctcttatgcccaacactattgggcttgacacgttgttataaatagtgggtgatcc 471  Q
      || || ||||||||||| ||||||||||   ||| | ||||||| |||||||||||    
T  25323917 cccccctcatgcccaacaccattgggcttggtgcgtggatataaatggtgggtgatcc 25323974  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 12699797 - 12699708
Alignment:
Q  301 aaattatggttgtgtctaacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaatacttatttaggccatctct 390  Q
    ||||| ||||||  |||||||||||||||| |||||||| | | ||  || | |||||| || |||||||||||| ||||| ||||||||    
T  12699797 aaattgtggttggctctaacacaacctcacgaaaccggtttgtaaggtgatagttaccctcacttataaatacttgtttagaccatctct 12699708  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 408
Target Start/End: Original strand, 44576266 - 44576367
Alignment:
Q  307 tggttgtgtctaacacaacctcacaaaaccggtctatgagacgagaattacccccatttataaatacttatttaggccatctctcaacagatgcgagact 406  Q
    |||||| || |||||||| | |||||||||||| | || | || | ||| ||| || ||||||| | ||||| ||||||||||||||| |||||| ||||    
T  44576266 tggttgggtgtaacacaaacccacaaaaccggtttgtgcggcgcggatttcccacacttataaacatttattcaggccatctctcaactgatgcgggact 44576365  T
Q  407 ct 408  Q
    ||    
T  44576366 ct 44576367  T

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