View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_49 (Length: 204)
Name: NF18537_low_49
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_49 |
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| [»] chr7 (12 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 4846707 - 4846910
Alignment:
| Q |
1 |
ctcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4846707 |
ctcacacctgttgcgataaaacgtcgtaaaccgggttctcgataaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattc |
4846806 |
T |
|
| Q |
101 |
acttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggccctctcagtgaacatctctatggttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4846807 |
acttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggtactctcagtgaacatctctatggttc |
4846906 |
T |
|
| Q |
201 |
ggat |
204 |
Q |
| |
|
|||| |
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|
| T |
4846907 |
ggat |
4846910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 4712752 - 4712955
Alignment:
| Q |
1 |
ctcacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattc |
100 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4712752 |
ctcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctctcagcttcgtcatattc |
4712851 |
T |
|
| Q |
101 |
acttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggccctctcagtgaacatctctatggttc |
200 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| ||| |||| ||||| ||||||||||||||||||| |
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| T |
4712852 |
acttagtttccctcattggatattgcaatgaagatgcagagatgattcttgtttatgactttatggaacatggcactctccgtgaacatctctatggttc |
4712951 |
T |
|
| Q |
201 |
ggat |
204 |
Q |
| |
|
|||| |
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|
| T |
4712952 |
ggat |
4712955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 6 - 204
Target Start/End: Complemental strand, 4863314 - 4863116
Alignment:
| Q |
6 |
acctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcacttg |
105 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||| ||||||| ||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
4863314 |
acctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgagatcgaattactctctcagcttcgtcatattcacttg |
4863215 |
T |
|
| Q |
106 |
gtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggccctctcagtgaacatctctatggttcggat |
204 |
Q |
| |
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||||| |||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||||| ||||| |||| |||||||||||| |
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|
| T |
4863214 |
gtttctctcattggatattgcaacgaaggtgaggagatgattctcgtttatgacttcatgcaacgtggcactctccgtgaatatctttatggttcggat |
4863116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 4697879 - 4698079
Alignment:
| Q |
4 |
acacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcact |
103 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||| ||||||| |||| || |||||||||||||||||| |||||||||| |||||||| ||||||| |
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| T |
4697879 |
acacctgtagcaataaaacgtttgaaaccgggttctcaacaaggtgtaaacgagttcatgaatgaaatcgagttgctctctcaacttcgtcacattcact |
4697978 |
T |
|
| Q |
104 |
tggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggccctctcagtgaacatctctatggttcgga |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| |||||||| |||| ||||| |||||||||||||||| |
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| T |
4697979 |
tggtttctctcattggatattgcaacgaaggtgcagagatgattctcgtttacgacttcatggaacgtggcactcttcgtgaatatctctatggttcgga |
4698078 |
T |
|
| Q |
204 |
t |
204 |
Q |
| |
|
| |
|
|
| T |
4698079 |
t |
4698079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 4784524 - 4784694
Alignment:
| Q |
4 |
acacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcact |
103 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||||| ||||||| | || || ||| ||||||| || ||| ||||||||||||||||||||||||||| |
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| T |
4784524 |
acaccagttgcgataaaacgtcttaaaccaggttctcaacaaggtgtgaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcact |
4784623 |
T |
|
| Q |
104 |
tggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggc |
174 |
Q |
| |
|
||||||| || |||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||| |
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| T |
4784624 |
tggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggc |
4784694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 4816953 - 4817123
Alignment:
| Q |
4 |
acacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcact |
103 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||||| ||||||| | || || ||| ||||||| || ||| ||||||||||||||||||||||||||| |
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|
| T |
4816953 |
acaccagttgcgataaaacgtcttaaacctggttctcaacaaggtgttaacgagttcttgaatgagattgagttgctctctcagcttcgtcatattcact |
4817052 |
T |
|
| Q |
104 |
tggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaacgtggc |
174 |
Q |
| |
|
||||||| || |||||||||||||| |||| || |||||||||||| |||||||||||||||||||||||| |
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|
| T |
4817053 |
tggtttcacttattggatattgcaatgaaggtgtagagatgattctcgtttatgacttcatgcaacgtggc |
4817123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 4643077 - 4642968
Alignment:
| Q |
58 |
ttcatgaatgaaatcgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatg |
157 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| || ||||||||||| |||||| | |||||||||||||| || ||||||||||| | ||||||| |
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|
| T |
4643077 |
ttcatgaatgaaatcgagttgctctcccagcttcgccacattcacttggtgtccctcgtgggatattgcaacgatgacacagagatgattttggtttatg |
4642978 |
T |
|
| Q |
158 |
acttcatgca |
167 |
Q |
| |
|
| |||||||| |
|
|
| T |
4642977 |
agttcatgca |
4642968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 4630337 - 4630173
Alignment:
| Q |
3 |
cacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcac |
102 |
Q |
| |
|
||||||||||||||||||||| | ||| | || |||| ||||||| || || |||||||| ||||||||| ||||||| |||||||| || |||||| |
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|
| T |
4630337 |
cacacctgttgcgataaaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaacgaaatcgagttgctctcccagcttcgccacattcac |
4630238 |
T |
|
| Q |
103 |
ttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgca |
167 |
Q |
| |
|
||||| ||||| | ||||||||||| || | ||||||||||||| |||||||| |||||||| |
|
|
| T |
4630237 |
ttggtgtcccttgtaggatattgcaatgacaacacagagatgattctggtttatgagttcatgca |
4630173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 58 - 167
Target Start/End: Complemental strand, 4666308 - 4666199
Alignment:
| Q |
58 |
ttcatgaatgaaatcgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatg |
157 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| || ||||||||||| ||||| | ||||||||||| || || ||||||||||||| ||||||| |
|
|
| T |
4666308 |
ttcatgaacgaaatcgaattgctctctcagcttcgccacattcacttggtatcccttgtgggatattgcaatgacgacacagagatgattctggtttatg |
4666209 |
T |
|
| Q |
158 |
acttcatgca |
167 |
Q |
| |
|
| |||||||| |
|
|
| T |
4666208 |
agttcatgca |
4666199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 4636285 - 4636121
Alignment:
| Q |
3 |
cacacctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcac |
102 |
Q |
| |
|
|||||| |||||||||||||| | | |||| |||| ||||||| |||||| |||||||| || |||||| ||||||| |||||||| || |||||| |
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|
| T |
4636285 |
cacacccgttgcgataaaacgcctcaggtcgggctctcaacaaggtgcaaatgagttcatgaacgagatcgagttgctctcccagcttcgccacattcac |
4636186 |
T |
|
| Q |
103 |
ttggtttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgca |
167 |
Q |
| |
|
||||| ||||| | |||||||||||||| | ||||||||||||| || ||||| |||||||| |
|
|
| T |
4636185 |
ttggtatcccttgtgggatattgcaacgacaagacagagatgattctggtctatgagttcatgca |
4636121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 169
Target Start/End: Complemental strand, 4652944 - 4652782
Alignment:
| Q |
7 |
cctgttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattcacttgg |
106 |
Q |
| |
|
||||||||||||||||| | ||| | || |||| ||||||| || || ||||||||||| |||||| | ||||| |||||||| || |||||||||| |
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|
| T |
4652944 |
cctgttgcgataaaacgcctcaaatctggctctcaacaaggtgccaacgagttcatgaatgagatcgagttactctcccagcttcgccacattcacttgg |
4652845 |
T |
|
| Q |
107 |
tttccctcattggatattgcaacgaagatgcagagatgattctagtttatgacttcatgcaac |
169 |
Q |
| |
|
| |||||| | ||||||||||| || || |||| |||||| | |||||||| |||||||||| |
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|
| T |
4652844 |
tatccctcgtgggatattgcaatgatgacacagaaatgattttggtttatgagttcatgcaac |
4652782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 4672013 - 4671940
Alignment:
| Q |
58 |
ttcatgaatgaaatcgagatgctctctcagcttcgtcatattcacttggtttccctcattggatattgcaacga |
131 |
Q |
| |
|
|||||||| ||||||||| | |||||||| ||||| || ||||||||||| |||||| ||||||||||| |||| |
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|
| T |
4672013 |
ttcatgaacgaaatcgagttactctctcaacttcgccacattcacttggtatccctcgttggatattgcgacga |
4671940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 5479305 - 5479396
Alignment:
| Q |
10 |
gttgcgataaaacgtcgtaaaccgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagatgctctctcagcttcgtcatattca |
101 |
Q |
| |
|
||||| |||||||| | |||||||||||| | ||||||| |||||| ||||| ||||||||||| |||||||| |||||||||||||||| |
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|
| T |
5479305 |
gttgcaataaaacggcttaaaccgggttcacaacaaggtgaaaatgagttcatcaatgaaatcgacatgctctcgaagcttcgtcatattca |
5479396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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