View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_5 (Length: 565)
Name: NF18537_low_5
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Complemental strand, 55986810 - 55986368
Alignment:
| Q |
18 |
cacacaaagggaaatactatcttgttggttgagtggtgttatcctccatcgatgtttttaaaatggcacagatgcctatgcataaataaattgagattgc |
117 |
Q |
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| T |
55986810 |
cacacaaagggaaatactatcttgttggttgagtggtgttatcctccatcgatgtttttacaatggcacagatgcctatgcataaataaattgagattgc |
55986711 |
T |
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| Q |
118 |
ttagggattagggatggacctttttattccttcttgcgtttgttgattctatggtgctccagagcatgtgattttctgtctggtatcactggaattactg |
217 |
Q |
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| T |
55986710 |
ttagggattagagatggacctttttattccttcttgcgtttgttgattctatggtgctccagagaatgtgattttctgtctggtatcactggaattactg |
55986611 |
T |
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| Q |
218 |
aatgcctcaacgcaagtcgcaagacggcaattagtttgtgtt-ttttattgttttgatttgctagttgtaattaattatgaagcattcaagtatttctga |
316 |
Q |
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| T |
55986610 |
aatgcctcaacgcaagtcgcaagacggcaattagtttgtgtttttttattgttttgatttgctagttgtaattaattatgaagca-tcaagtatttctga |
55986512 |
T |
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| Q |
317 |
cctcagaaactcattgatgaacaatacgttgaatgttctggtactaatctttcgagagtatattatgtgcatttgcacctgtcctctttactttggtgaa |
416 |
Q |
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| T |
55986511 |
cctcagaaactcattgatgaacaatacgttgaatgtttcggtactaatctttcgagagtatgttatgtgcatttgcacctgtcctctttactttggtgaa |
55986412 |
T |
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| Q |
417 |
gtctaacatacgtatcttgcttttgttggtgttaaatgttttat |
460 |
Q |
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| T |
55986411 |
gtctaacatacctatcttgcttttgttggtgttaaatgttttat |
55986368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 452 - 537
Target Start/End: Complemental strand, 55984764 - 55984679
Alignment:
| Q |
452 |
atgttttatttatgaactttatattgcataacattgatacatttataatgatgttttttaattgctttaatacactaactcgtgct |
537 |
Q |
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| T |
55984764 |
atgttttatttatgaactttatattgcataacattgatacatttataatgatgttttttaattgctttaatacactaactcgtgct |
55984679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 33552124 - 33552167
Alignment:
| Q |
258 |
ttttttattgttttgatttgctagttgtaattaattatgaagcat |
302 |
Q |
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| T |
33552124 |
ttttttattgttttgatttgctagttgt-attaattatgaagcat |
33552167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 208
Target Start/End: Original strand, 31782213 - 31782281
Alignment:
| Q |
140 |
tttattccttcttgcgtttgttgattctatggtgctccagagcatgtgattttctgtctggtatcactg |
208 |
Q |
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| T |
31782213 |
tttattcttgcttgtgtttgttgattctatggtgctctagcgcatgcgattttgtgtttgatatcactg |
31782281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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