View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_50 (Length: 203)
Name: NF18537_low_50
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_50 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 31078095 - 31077910
Alignment:
| Q |
18 |
cacatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactaca |
117 |
Q |
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| T |
31078095 |
cacatgactatgcttagagagtagccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactaca |
31077996 |
T |
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| Q |
118 |
aatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttgctttttctttaagctctttttt |
203 |
Q |
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| T |
31077995 |
aatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttgctttttctttaagctctttttt |
31077910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 31132120 - 31131936
Alignment:
| Q |
19 |
acatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaa |
118 |
Q |
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| T |
31132120 |
acatgactatgcttagagattaacaaaaagaaccacgtgagtgcagctgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaa |
31132021 |
T |
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| Q |
119 |
atgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttgctttttctttaagctctttttt |
203 |
Q |
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| T |
31132020 |
aagattcgtccgaatgaccagaacttaaaaatcgcgacaaaatatccaccgattccaaggtttccttttctttaagctctttttt |
31131936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 31127413 - 31127228
Alignment:
| Q |
18 |
cacatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
31127413 |
cacatgactatgcttagagagtaaccaaaagaaccaagtgagtgcagctgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaaca |
31127314 |
T |
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| Q |
118 |
aatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttgctttttctttaagctctttttt |
203 |
Q |
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|| |||||||| |||||||| ||||||||||| || |||| || ||| | ||||||||| | || |||||||| |||||| ||||| |
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| T |
31127313 |
aaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaacgatgatttttcttcaagctccttttt |
31127228 |
T |
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