View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_6 (Length: 555)
Name: NF18537_low_6
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 40410719 - 40411051
Alignment:
| Q |
18 |
agtaggatcctttgccaaaatagcttccatgagaagccaaactaccttatttagaatcccgttgaataatatgcaccataatctcttttgcagatgcaat |
117 |
Q |
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| T |
40410719 |
agtaggatcctttgccaaaatagcttccatgagaagccaaactaccttatttagaatcccgttgaataatatgcaccataatctcttttgcagatgcaat |
40410818 |
T |
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| Q |
118 |
aaatttgagagataaaagtatgattttttagttgatagcaagacaaaattgttagctggaatcaaagtttggacttcatttttagtactcctttcaacat |
217 |
Q |
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| T |
40410819 |
aaatttgagagataaaagtatgactttttagttgatagcaagacaaatttgttagctggaatcaaagtttggacttcatttttagtact--gatcaacat |
40410916 |
T |
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| Q |
218 |
catcttgacaatattaataatatcagttagctacatatactatctctgacaacggataaaaggtatgatctaacttagaacatatatacttccatatatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40410917 |
catcttgacaatattaataatatcagttagctacatatactacctctgacaacggataaaaggtatgatctaacttagaac----atacttccatatatt |
40411012 |
T |
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| Q |
318 |
attgccctcccaactattaaatcattgagatggcaacat |
356 |
Q |
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| T |
40411013 |
attgccctcccaactattaaatcatagagatggcaacat |
40411051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 456 - 544
Target Start/End: Original strand, 40411527 - 40411612
Alignment:
| Q |
456 |
ataattgcttgccgaatactactgctagtacaaagtgtacaaccttgttacatgatatatataagctgaatacgtacgttgtccttcat |
544 |
Q |
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| T |
40411527 |
ataattgcttgccgaatactact---agtacaaagtgtacaaccttgttacatgatatatataaactgaatacgtacgttgtccttcat |
40411612 |
T |
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