View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_7 (Length: 518)
Name: NF18537_low_7
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 19 - 504
Target Start/End: Original strand, 54459442 - 54459927
Alignment:
| Q |
19 |
tgaagtttaacatatgatgttttatttgagtatcccaatttgcaggctaagccagaccccgatctctatggtgcaaagcgaaaagcattgacacttgatg |
118 |
Q |
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| T |
54459442 |
tgaagtttaacatatgatgttttatttgagtatcccaatttgcaggctaagccagaccccgatctctatggtgcaaagcgaaaagcattgacacttgatg |
54459541 |
T |
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| Q |
119 |
ctcctaatgatgatccttatgcaattggtatgaagaaaaaaccaaaggaagagtggagttgtgaactgtgccaaattaaagccacaagtgagagtggctt |
218 |
Q |
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| T |
54459542 |
ctcctaatgatgatccttatgcaattggtatgaagaaaaaaccaaaggaagagtggagttgtgaactgtgccaaattaaagccacgagtgagagtggctt |
54459641 |
T |
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| Q |
219 |
gaatgctcatctgaatggtaagaagcacaaggccaaggaagcaggacaaaaaaggaagattgacaagtgcagcaggaaaagtcaaaaaatcgctgaaaag |
318 |
Q |
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| T |
54459642 |
gaatgctcatctgaatggtaagaagcacaaggccaaggaagcaggacaaaaaaggaagattgacaagtgcagcaggaaaagtcaaaaaaccgctgaaaag |
54459741 |
T |
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| Q |
319 |
atcactgatacagttgttgtagaaacagatcaacaagctcctcaaccttgcttagccttggaagtcatggatgagactatggttgataagggtctcacag |
418 |
Q |
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| T |
54459742 |
attactgatacagttgttgtagaaacagatcaacaagctcctcaaccttgcttagccttggaagtcatggatgagactatggttgataagggtctcacag |
54459841 |
T |
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| Q |
419 |
aatctaaaaaagaggagcagcttgtggagacgatggttcataatggtgttaccaaatccaataatgagaagcttgtggagatgatg |
504 |
Q |
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| T |
54459842 |
aatctaaaaaagaggagcagcttgtggagacgatggttgataatggtgttaccaaatccaataatgagaagcttgtggagatgatg |
54459927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 33 - 272
Target Start/End: Original strand, 54058399 - 54058640
Alignment:
| Q |
33 |
tgatgttttatttgagtatcccaatttgcaggctaagccagaccccgatctctatggtgcaaagcgaaaagcattgacacttgat---gctcctaatgat |
129 |
Q |
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||||||||||| ||||||||| |||| |||||||||||||||| | |||| || ||||||||||||||||| |||||| |||| | || | | || |
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| T |
54058399 |
tgatgttttatctgagtatcctaatta-caggctaagccagaccttggtctcgatagtgcaaagcgaaaagcagtgacacatgatattgttcttgacgac |
54058497 |
T |
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| Q |
130 |
gatccttatgcaattggtatgaagaaaaaaccaaaggaagagtggagttgtgaactgtgccaaattaaagccacaagtgagagtggcttgaatgctcatc |
229 |
Q |
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| T |
54058498 |
gagccttctgcaattggttcgaacaaaaagctgaagaaagagtggagttgtgaactgtgtcagattaaagcctcaagtgagaatggcttgaatgatcatc |
54058597 |
T |
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| Q |
230 |
tgaatggtaagaagcacaaggccaaggaagcaggacaaaaaag |
272 |
Q |
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| T |
54058598 |
tgaatggtaagaagcataaggctagagaagcaagacagaaaag |
54058640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 81 - 285
Target Start/End: Complemental strand, 15038907 - 15038703
Alignment:
| Q |
81 |
tctctatggtgcaaagcgaaaagcattgacacttgatgctcctaatgatgatccttatgcaattggtatgaagaaaaaaccaaaggaagagtggagttgt |
180 |
Q |
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||||||| |||||||||||||||| |||||| |||| ||||| ||||| |||| |||||||||| |||| ||||| | ||||| |||||||||||| |
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| T |
15038907 |
tctctatagtgcaaagcgaaaagcggtgacacaagatgttcctagcgatgagccttctgcaattggtttgaacaaaaagctgaaggaggagtggagttgt |
15038808 |
T |
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| Q |
181 |
gaactgtgccaaattaaagccacaagtgagagtggcttgaatgctcatctgaatggtaagaagcacaaggccaaggaagcaggacaaaaaaggaagattg |
280 |
Q |
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| T |
15038807 |
gaactgtgtcggattaatgccacgagtgagaatggcttgaatgatcatctgaatggtaagaagcataaggctagggaagcaagacagaaaagggagattg |
15038708 |
T |
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| Q |
281 |
acaag |
285 |
Q |
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||||| |
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| T |
15038707 |
acaag |
15038703 |
T |
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