View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18537_low_8 (Length: 485)
Name: NF18537_low_8
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18537_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 471
Target Start/End: Complemental strand, 36031612 - 36031140
Alignment:
| Q |
13 |
taggccacaaaacttatgaatttagtttctatatttcatgtggaaggtcaaggaatggaggcgccagataccggtataggtttctcggtgaaatcggcct |
112 |
Q |
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| T |
36031612 |
taggccacaaaacttatgaatttagtttctatatttcatgtggaaggtcaaggaatggaggcgccggataccggtataggtttctcggtgaaatcggcct |
36031513 |
T |
|
| Q |
113 |
atgttttccatgaaggtaaacttcttgggagaagccttttaggttgagagtaatttgtgttgaaaaagcaattctctagttttacaccatcttaggtaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031512 |
atgttttccatgaaggtaaacttcttgggagaagccttttaggttgagagtaatttgtgttgaaaaagcaattctctagttttacaccatcttaggtaat |
36031413 |
T |
|
| Q |
213 |
tgattttcatcagtatagcttctttttagataagaataattcctacta--------------atttcattggggagtttatcattgagcctcaagatgtc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
36031412 |
tgattttcatcagtatagcttctttttagataagaataattcctactaaataattctaacttatttcattggggagtttatcattgaacctcaagatgtc |
36031313 |
T |
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| Q |
299 |
tttagataatttgtgtgacaacattgaggaaacgactttgcacttattcatgagatgtgattttgcagctcaaatgtggtatgtggtgtttaggttggtg |
398 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36031312 |
ttttgataatttgtgtgacaacattgaggaaacgactttgcacttattcatgagatgtgattttgcagctcaaatgtggtatgtggtgtttaggttggtg |
36031213 |
T |
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| Q |
399 |
ggtttggttatgtctctcttattctgaatgcattattttcttgcatccatgggtgtgggaagaatgttccaag |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36031212 |
ggtttggttatgtctctcttattctgaatgcattattttcttgcatccatggatgtgggaagaatgttccaag |
36031140 |
T |
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