View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18537_low_9 (Length: 462)

Name: NF18537_low_9
Description: NF18537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18537_low_9
NF18537_low_9
[»] chr1 (23 HSPs)
chr1 (58-448)||(3341288-3341681)
chr1 (99-432)||(3349577-3349910)
chr1 (306-446)||(3340839-3340979)
chr1 (306-446)||(3341139-3341279)
chr1 (189-432)||(2948060-2948303)
chr1 (283-447)||(3340988-3341152)
chr1 (183-432)||(9818496-9818745)
chr1 (306-429)||(3340706-3340829)
chr1 (189-432)||(9820191-9820433)
chr1 (183-291)||(9716401-9716509)
chr1 (189-358)||(4322709-4322878)
chr1 (193-358)||(4334603-4334768)
chr1 (200-432)||(3361910-3362142)
chr1 (251-410)||(2012158-2012317)
chr1 (254-425)||(3218177-3218348)
chr1 (192-430)||(2006645-2006883)
chr1 (98-175)||(3379202-3379279)
chr1 (382-429)||(3378929-3378976)
chr1 (252-359)||(3372955-3373062)
chr1 (99-149)||(9809675-9809725)
chr1 (92-141)||(3362201-3362250)
chr1 (111-148)||(3373178-3373215)
chr1 (92-141)||(4334490-4334539)
[»] chr2 (5 HSPs)
chr2 (184-359)||(20953257-20953432)
chr2 (189-359)||(20934719-20934889)
chr2 (193-337)||(20927357-20927501)
chr2 (244-432)||(39274244-39274432)
chr2 (203-430)||(20923671-20923898)
[»] chr5 (1 HSPs)
chr5 (183-364)||(17970121-17970302)
[»] chr4 (1 HSPs)
chr4 (340-432)||(21237727-21237819)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 58 - 448
Target Start/End: Complemental strand, 3341681 - 3341288
Alignment:
Q  58 tacctttaaaaattctgtattaatgaataagctatgtatttgaggtagatgaacgaaaaa-tttgagcaaattgctaaagcatccttgcaatccaatttg 156  Q
    |||||||||||| |||  |  |||||||| | |||||||||||||||||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||    
T  3341681 tacctttaaaaaatcttgacaaatgaataggttatgtatttgaggtagatgaacaaaaaaatttgagcaaattgctagagcatccatgcaatccaatttg 3341582  T
Q  157 atttctttcagaggtcaaaacaacagataccatagctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgaga 256  Q
    ||| || | ||||  ||||| ||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||    || ||| ||| ||||||||    
T  3341581 attgctcttagagaacaaaataacagatactagagctaattgtaaagtgtcgtcaaagttaatactctcaaattcacataagatatctaaacacttgaga 3341482  T
Q  257 tttggtgcatgaatattaatctgtgttaaaccatcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcat-ct 355  Q
    |||||||||||||||||||||||||||||||||||||||| |  |||  |||||| |||||| |||||||||| ||||||| |||||||||||||||  |    
T  3341481 tttggtgcatgaatattaatctgtgttaaaccatcaatttctttcaatgtcaattcttcaagtagggggcagctagatatcatgttttcaaaagcatgat 3341382  T
Q  356 tgagtcattctaactttagacaaagaaagacttttcaaattccggaagccttcaa-atgttgttggaggtttaagccataaaccatcaatttct 448  Q
     |||||||||||||   ||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||    
T  3341381 ggagtcattctaacgacagacaaagaaagagtattcaaattccggaagcgttcaagatgttgttggaggtttaatccataagccatcaatttct 3341288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 99 - 432
Target Start/End: Complemental strand, 3349910 - 3349577
Alignment:
Q  99 gaggtagatgaacgaaaaatttgagcaaattgctaaagcatccttgcaatccaatttgatttctttcagaggtcaaaacaacagataccatagctaattg 198  Q
    ||||||||||| ||||||||||||||||||||||| || |||| ||||||| |  |||||| |||| |||  ||| |  |||  |||   ||||||||||    
T  3349910 gaggtagatgatcgaaaaatttgagcaaattgctagagaatccatgcaatctaccttgattgcttttagatttcatataaacgaatattgtagctaattg 3349811  T
Q  199 aaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaaccatcaattttt 298  Q
    |||||||||||||||||||||||||||||||||| | | ||  |||||| |||||||| |||||||||| |||||||| || ||||||||||||||||||    
T  3349810 aaaagtgttgtcaaagttaatactctcaaattcatcttcgatttcaaaaaacttgagacttggtgcatggatattaatatgggttaaaccatcaattttt 3349711  T
Q  299 gccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattcc 398  Q
    | |||  ||||| | |||||||||||||||||||| ||| |||| |  |||||||||||||||||| ||||   |  |||| |||||||||||| |||||    
T  3349710 gtcaatgtcaatctctcaagcagggggcagccagacatcatgttattgaaagcatcttgagtcattgtaacccgattcaaataaagacttttcagattcc 3349611  T
Q  399 ggaagccttcaaatgttgttggaggtttaagcca 432  Q
    |||||||||||||  |||||||||||||||||||    
T  3349610 ggaagccttcaaaaattgttggaggtttaagcca 3349577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 306 - 446
Target Start/End: Complemental strand, 3340979 - 3340839
Alignment:
Q  306 tcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagcc 405  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3340979 tcaattcttcaagcagggggcagccagatatcatgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagcc 3340880  T
Q  406 ttcaaatgttgttggaggtttaagccataaaccatcaattt 446  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  3340879 ttcaaatgttgttggaggtttaagccataaaccatcaattt 3340839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 306 - 446
Target Start/End: Complemental strand, 3341279 - 3341139
Alignment:
Q  306 tcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagcc 405  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  3341279 tcaattcttcaagcagggggcagccagatatcatgttttcaaaagcatcttgagtcattctaactttaaacaaagaaagacttttcaaattccggaaacc 3341180  T
Q  406 ttcaaatgttgttggaggtttaagccataaaccatcaattt 446  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  3341179 ttcaaatgttgttggagctttaagccataaaccatcaattt 3341139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 189 - 432
Target Start/End: Original strand, 2948060 - 2948303
Alignment:
Q  189 tagctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaacc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||| | | ||  |||||| |||||||||||||||||||||||||||| || ||||||||    
T  2948060 tagctaattgaaaagtgttgtcaaagttaatactctcaaattcatcgtcgacttcaaaaaacttgagatttggtgcatgaatattaatatgagttaaacc 2948159  T
Q  289 atcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaaagactt 388  Q
    |||||||||||||||  ||||||| || |||| |||||||||| ||||| |||| |  |||||||||||| ||||| ||||   |  |||| ||||| ||    
T  2948160 atcaatttttgccaatgtcaatttctctagcacggggcagccatatatcatgttattgaaagcatcttgactcattgtaacccgattcaaataaagaatt 2948259  T
Q  389 ttcaaattccggaagccttcaaatgttgttggaggtttaagcca 432  Q
    |||| | ||||||||||||||||  |||||||||||||||||||    
T  2948260 ttcatactccggaagccttcaaactttgttggaggtttaagcca 2948303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 283 - 447
Target Start/End: Complemental strand, 3341152 - 3340988
Alignment:
Q  283 taaaccatcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaa 382  Q
    |||||||||||||||  ||||   ||||| ||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||   ||||||||||    
T  3341152 taaaccatcaattttatccaaagccaattcttcaagcagagggcagccagatatcatgttttcaaatgcatcttgagtcattctaacgacagacaaagaa 3341053  T
Q  383 agacttttcaaattccggaagccttcaaatgttgttggaggtttaagccataaaccatcaatttc 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3341052 agacttttcaaattccggaagccttcaaatgttgttggaggtttaatccataaaccatcaatttc 3340988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 183 - 432
Target Start/End: Original strand, 9818496 - 9818745
Alignment:
Q  183 ataccatagctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgt 282  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||  | | ||  |||||| |||||||||||||||||| ||||||||| || ||    
T  9818496 atacaatagataattgaaaagtgttgtcaaagttaatactctcaaattcttcgtcgacttcaaaaaacttgagatttggtgcatcaatattaatatgggt 9818595  T
Q  283 taaaccatcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaa 382  Q
    ||||||||||||||||| |||  ||||||| || || |||||||| |||| |||| |||| |  |||||  ||||||||||| ||||   |  |||| ||    
T  9818596 taaaccatcaatttttgtcaatgtcaatttctctagtagggggcatccagctatcatgttattgaaagctacttgagtcattgtaacccgattcaaataa 9818695  T
Q  383 agacttttcaaattccggaagccttcaaatgttgttggaggtttaagcca 432  Q
    |||||||||  |||||| |||||||||||  |||||||||||||||||||    
T  9818696 agacttttctgattccgaaagccttcaaacattgttggaggtttaagcca 9818745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 306 - 429
Target Start/End: Complemental strand, 3340829 - 3340706
Alignment:
Q  306 tcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagcc 405  Q
    |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||    
T  3340829 tcaattcttcaagcagggggcagccacatatcatgttttcaaaagcatcttgagtcattgtaacttcaaacaaagaaagacttttcaaattccggaagcc 3340730  T
Q  406 ttcaaatgttgttggaggtttaag 429  Q
    |||||| || |||||||| |||||    
T  3340729 ttcaaacgtcgttggaggattaag 3340706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 189 - 432
Target Start/End: Complemental strand, 9820433 - 9820191
Alignment:
Q  189 tagctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaacc 288  Q
    |||||||||||||| ||||||||||||||||||||||||||||| | | ||  |||||| || ||||||||||||||| |||||||   || | ||||||    
T  9820433 tagctaattgaaaactgttgtcaaagttaatactctcaaattcatcgtcgacttcaaaaaacatgagatttggtgcataaatatta---tgggataaacc 9820337  T
Q  289 atcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattct-aactttagacaaagaaagact 387  Q
    ||||||||| |  ||  ||||||| || || |||||||||||| ||||| |||| |  |||||||||||||||||||| |||   |  |||| |||||||    
T  9820336 atcaatttt-gttaatgtcaatttctctagaagggggcagccaaatatcatgttattgaaagcatcttgagtcattctaaacccgattcaaataaagact 9820238  T
Q  388 tttcaaattccggaagccttcaaatgttgttg--gaggtttaagcca 432  Q
    ||| | ||| |||||||||||||| |||||||  |||||||||||||    
T  9820237 ttttagatttcggaagccttcaaacgttgttggagaggtttaagcca 9820191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 183 - 291
Target Start/End: Complemental strand, 9716509 - 9716401
Alignment:
Q  183 ataccatagctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgt 282  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||||||||| | ||  |||||| |||||||||||||||||||||||||||| || ||    
T  9716509 atacaatagctaattgaaaagtgttgccaaagttaatactctaaaattcaccgtcgacttcaaaaaacttgagatttggtgcatgaatattaatatgggt 9716410  T
Q  283 taaaccatc 291  Q
    |||||||||    
T  9716409 taaaccatc 9716401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 189 - 358
Target Start/End: Original strand, 4322709 - 4322878
Alignment:
Q  189 tagctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaacc 288  Q
    ||||||| |||||||||||||||||| |||||| ||| |||  ||| | ||  |||||| ||||||||||||||||||| |||||||| || ||||||||    
T  4322709 tagctaactgaaaagtgttgtcaaaggtaataccctcgaatagaccttcgatttcaaaaaacttgagatttggtgcatggatattaatttgggttaaacc 4322808  T
Q  289 atcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttga 358  Q
    ||||| || || ||| ||||  |||||||||| ||||||    |||||| ||||||||||||||||||||    
T  4322809 atcaacttctgtcaatttcatcttttcaagcaaggggcatttggatatcatgttttcaaaagcatcttga 4322878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 193 - 358
Target Start/End: Original strand, 4334603 - 4334768
Alignment:
Q  193 taattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaaccatca 292  Q
    |||||| ||||||||| ||||| ||| |  |||||||||||||  ||  |||||| |||||||||||||||||||||||||||| || |||||||||| |    
T  4334603 taattggaaagtgttgccaaaggtaacaacctcaaattcaccaacgatttcaaaaaacttgagatttggtgcatgaatattaatttgcgttaaaccataa 4334702  T
Q  293 atttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttga 358  Q
    | || |  |||  |||| |||||||||| |||||| | ||| ||   |||||||||||||||||||    
T  4334703 aattctctcaatctcaacttttcaagcaaggggcacctagagataaagttttcaaaagcatcttga 4334768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 432
Target Start/End: Complemental strand, 3362142 - 3361910
Alignment:
Q  200 aaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaaccatcaatttttg 299  Q
    |||||||| |||||| |||||  ||||||||||||| ||| || |  |  ||| ||||||||| | || |||||||| ||  | ||||||||||  ||      
T  3362142 aaagtgttttcaaagctaatatcctcaaattcaccactgatatgagcaaccttcagatttggtccgtggatattaatttggctgaaaccatcaaggttaa 3362043  T
Q  300 ccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccg 399  Q
     |||| ||||||||||||| |  |||| |   || ||| |||||||||||| ||||||||||||| |||| | |  |||   |||||||||||| |||      
T  3362042 acaacatcaatttttcaagaaaagggctgttggagatcatgttttcaaaagaatcttgagtcattgtaacgtgactcaattcaagacttttcaagttctt 3361943  T
Q  400 gaagccttcaaatgttgttggaggtttaagcca 432  Q
    |||||||||||| ||||||||||||||||||||    
T  3361942 gaagccttcaaacgttgttggaggtttaagcca 3361910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 410
Target Start/End: Complemental strand, 2012317 - 2012158
Alignment:
Q  251 ttgagatttggtgcatgaatattaatctgtgttaaaccatcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaag 350  Q
    |||||||||||||| ||||| || || || || ||||| |||| || ||||||| |||||||||||||||| ||||| | |||||||    | |||||||    
T  2012317 ttgagatttggtgcgtgaatgtttatttgggtgaaaccgtcaaattctgccaacatcaatttttcaagcagagggcaactagatatcaaactctcaaaag 2012218  T
Q  351 catcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagccttcaa 410  Q
    |||||||||  ||  ||||||||   ||| ||||||||||||| |||   ||||||||||    
T  2012217 catcttgagaaatagtaactttaactaaataaagacttttcaagttcttcaagccttcaa 2012158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 425
Target Start/End: Original strand, 3218177 - 3218348
Alignment:
Q  254 agatttggtgcatgaatattaatctgtgttaaaccatcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcat 353  Q
    |||||||||||||| |||||||  || |||||||| ||||  | |  ||| ||||| | ||| |||||| ||||||| ||||||  ||||||||||||||    
T  3218177 agatttggtgcatggatattaagttgggttaaaccttcaagatataacaatttcaaatcttctagcaggtggcagccggatatcaagttttcaaaagcat 3218276  T
Q  354 cttgagtcattctaactttagacaaagaaagacttttcaaattccggaagccttcaaatgttgttggaggtt 425  Q
    |||||| |||| |||| | | | |    |||||||||||| |||  |||||||| ||| |||||||||||||    
T  3218277 cttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttgttggaggtt 3218348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 192 - 430
Target Start/End: Complemental strand, 2006883 - 2006645
Alignment:
Q  192 ctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaaccatc 291  Q
    ||||||| ||||||||||||||| |||||  |||||||| ||||  || ||| |||  ||| ||||||||||| ||||| || || || || ||||||||    
T  2006883 ctaattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttaagatttggtgcgtgaatgtttatttgggtgaaaccatc 2006784  T
Q  292 aatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttc 391  Q
    || || || |||  |||| ||||||||||| ||||| | |||||||   || ||||||||||  |||| ||| ||||| | |  ||||  |||||||||     
T  2006783 aagttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaaatcaagacttttt 2006684  T
Q  392 aaattccggaagccttcaaatgttgttggaggtttaagc 430  Q
    || |||   ||||||||||  || | |||||||||||||    
T  2006683 aagttcttcaagccttcaatcgtcgatggaggtttaagc 2006645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 3379279 - 3379202
Alignment:
Q  98 tgaggtagatgaacgaaaaatttgagcaaattgctaaagcatccttgcaatccaatttgatttctttcagaggtcaaa 175  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||| |||||||   |||||||  |||||||| |||||    
T  3379279 tgaggtcgatgaacgaaaaatttgagcaaattgctagagcgtccgtgcaatcttctttgattgatttcagagctcaaa 3379202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 3378976 - 3378929
Alignment:
Q  382 aagacttttcaaattccggaagccttcaaatgttgttggaggtttaag 429  Q
    ||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  3378976 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaag 3378929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 359
Target Start/End: Complemental strand, 3373062 - 3372955
Alignment:
Q  252 tgagatttggtgcatgaatattaatctgtgttaaaccatcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagc 351  Q
    ||||||||||||| |||| |||||| ||||  || |||||||||||   |||   ||| |  ||||| || ||||||||||||||| ||||||||||| |    
T  3373062 tgagatttggtgcgtgaacattaatttgtgagaagccatcaattttcatcaataccaaatggtcaagtagagggcagccagatatcatgttttcaaaatc 3372963  T
Q  352 atcttgag 359  Q
    ||||||||    
T  3372962 atcttgag 3372955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 9809725 - 9809675
Alignment:
Q  99 gaggtagatgaacgaaaaatttgagcaaattgctaaagcatccttgcaatc 149  Q
    ||||||||||| ||||||||||| ||||||||||| || |||| |||||||    
T  9809725 gaggtagatgatcgaaaaatttgggcaaattgctagagaatccatgcaatc 9809675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 3362250 - 3362201
Alignment:
Q  92 tgtatttgaggtagatgaacgaaaaatttgagcaaattgctaaagcatcc 141  Q
    ||||| |||||||||||||||||||||   |||||||||||| |||||||    
T  3362250 tgtatgtgaggtagatgaacgaaaaatcgaagcaaattgctagagcatcc 3362201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Complemental strand, 3373215 - 3373178
Alignment:
Q  111 cgaaaaatttgagcaaattgctaaagcatccttgcaat 148  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  3373215 cgaaaaatttgagcaaattgctagagcatccatgcaat 3373178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 4334490 - 4334539
Alignment:
Q  92 tgtatttgaggtagatgaacgaaaaatttgagcaaattgctaaagcatcc 141  Q
    ||||| |||||| ||||| ||||||||||||||||||||||  |||||||    
T  4334490 tgtatgtgaggtcgatgatcgaaaaatttgagcaaattgctggagcatcc 4334539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 184 - 359
Target Start/End: Complemental strand, 20953432 - 20953257
Alignment:
Q  184 taccatagctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgtt 283  Q
    ||||| ||||||||||||||||||||| |||||||||| |||| |||| ||||  |  || ||| ||||||||||||||||| |||||||||| || ||     
T  20953432 taccacagctaattgaaaagtgttgtcgaagttaataccctcatattcgccatcaatttccaaaaacttgagatttggtgcacgaatattaatttgggtg 20953333  T
Q  284 aaaccatcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgag 359  Q
    |||||||||| || |  ||| ||||||||||||||||| ||||||||||| |||  ||||||||||||||||||||    
T  20953332 aaaccatcaacttctatcaatttcaatttttcaagcagagggcagccagagatcaagttttcaaaagcatcttgag 20953257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 189 - 359
Target Start/End: Complemental strand, 20934889 - 20934719
Alignment:
Q  189 tagctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaacc 288  Q
    |||||||||| |||||||||| ||||||||||| |||| |||| |||| ||  || ||| |||||||||||||||||   |||| ||| || |  || ||    
T  20934889 tagctaattggaaagtgttgttaaagttaataccctcatattcgccatggatttccaaaaacttgagatttggtgcacagatatcaatttgggcgaagcc 20934790  T
Q  289 atcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgag 359  Q
    | ||| ||  | ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  20934789 accaacttcggtcaatttcaatttttcaagcagggggcagccagatatcaagttttcaaaagcatcttgag 20934719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 193 - 337
Target Start/End: Complemental strand, 20927501 - 20927357
Alignment:
Q  193 taattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaaccatca 292  Q
    |||||| ||||| || ||||||||||||  |||| ||||||||||||  |  ||| ||||||||||||||||| | |||||||  || || || ||||||    
T  20927501 taattggaaagtattttcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 20927402  T
Q  293 atttttgccaacttcaatttttcaagcagggggcagccagatatc 337  Q
    | || ||  || || ||||||||||||||||||||||||||||||    
T  20927401 acttctgtgaatttaaatttttcaagcagggggcagccagatatc 20927357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 432
Target Start/End: Complemental strand, 39274432 - 39274244
Alignment:
Q  244 aaaagacttgagatttggtgcatgaatattaatctgtgttaaaccatcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttt 343  Q
    |||| |||| ||||||||||||||||||||||  || ||||||||||||  || |  |||  |||| | |||||| || |||||||| |||||| | |||    
T  39274432 aaaaaacttcagatttggtgcatgaatattaacttgggttaaaccatcaggttctatcaaactcaaatattcaagtagagggcagccggatatcattttt 39274333  T
Q  344 tcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagccttcaaatgttgttggaggtttaagcca 432  Q
    ||||||||| | | || ||||  ||  |||   |    ||| |||||||| |||| |||||||||||||||||||||||||||||||||    
T  39274332 tcaaaagcagcatcagccattgaaatgttatgtagttcaagtcttttcaagttcctgaagccttcaaatgttgttggaggtttaagcca 39274244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 430
Target Start/End: Complemental strand, 20923898 - 20923671
Alignment:
Q  203 gtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgttaaaccatcaatttttgcca 302  Q
    |||||||||||| |||||| |||||| | |||  | |  |||| | |||||| | |||||| |||||| ||||| || || || ||||||| ||||  ||    
T  20923898 gtgttgtcaaagctaataccctcaaaattacccctaatgtcaacatacttgatacttggtgaatgaatgttaatttgagtgaatccatcaacttttttca 20923799  T
Q  303 acttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaa 402  Q
    |   ||||||||||||||  ||| |||||||||||  ||||||||||||||||| || || | ||||||    |||   |||||||||||| |||  |||    
T  20923798 aaaccaatttttcaagcaaaggggagccagatatcaagttttcaaaagcatctttagccactgtaacttgttccaattgaagacttttcaagttcatgaa 20923699  T
Q  403 gccttcaaatgttgttggaggtttaagc 430  Q
    |||||||||  | | |||||||||||||    
T  20923698 gccttcaaacatcgctggaggtttaagc 20923671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 364
Target Start/End: Complemental strand, 17970302 - 17970121
Alignment:
Q  183 ataccatagctaattgaaaagtgttgtcaaagttaatactctcaaattcaccattgaaatcaaaagacttgagatttggtgcatgaatattaatctgtgt 282  Q
    |||||| ||||||||| ||||||||||||||| | || | |||||||| ||||||||    |||| |||||||||||||||| |||||||||| ||| ||    
T  17970302 ataccacagctaattgcaaagtgttgtcaaagctgatgccctcaaatttaccattgatgcgaaaaaacttgagatttggtgcgtgaatattaaactgagt 17970203  T
Q  283 taaaccatcaatttttgccaacttcaatttttcaagcagggggcagccagatatcctgttttcaaaagcatcttgagtcatt 364  Q
     ||||| | || |  || |||  | |||||||||||| | |||||||| ||||||  ||||||||| |||||||||||||||    
T  17970202 gaaacccttaactgatgtcaatattaatttttcaagctgagggcagccggatatcaagttttcaaaggcatcttgagtcatt 17970121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 340 - 432
Target Start/End: Complemental strand, 21237819 - 21237727
Alignment:
Q  340 gttttcaaaagcatcttgagtcattctaactttagacaaagaaagacttttcaaattccggaagccttcaaatgttgttggaggtttaagcca 432  Q
    |||||| |||||||||||||||||| ||||||    |||||||||||||| ||| |||| |||||||||||| ||||||||||||||||||||    
T  21237819 gttttcgaaagcatcttgagtcattgtaacttcgatcaaagaaagactttccaagttcctgaagccttcaaacgttgttggaggtttaagcca 21237727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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