View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18538_high_1 (Length: 413)
Name: NF18538_high_1
Description: NF18538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18538_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 47728534 - 47728147
Alignment:
| Q |
18 |
acctaatgcatttgatgaacctggtgtcagacagaataaatgccttacttggagattcatatttcatgtaatgttttcaattctgcagttcaattagtct |
117 |
Q |
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| T |
47728534 |
acctaatgtatttgatgaacctggtgtcagacagaataaatgccttacttggagattcatatttcatgtaatgttttcaattctgcagttcaattagtct |
47728435 |
T |
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| Q |
118 |
gacataatagaaatattttattaacattataacctatgctttaaattttttaatgtctgcaaccaaagtttaaatgctttacttgataattcaggcacca |
217 |
Q |
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| T |
47728434 |
gacataatagaaatattttattaacattataacctatgctttaaattttttaatgtctgcaaccaaagtttaaatgctttacttgataattcaggcacca |
47728335 |
T |
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| Q |
218 |
gaaatctcagatgcaaatccaaacctcttcaaaaacttcacaagagtcttatgcaatgccaacacttctgaagggttccaacccaaaagggatgtgtcta |
317 |
Q |
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| T |
47728334 |
gaaatctcagatgcaaatccaaacctcttcaaaaacttcacaagagtcttatgcaatgccaacacttctgaagggttccaacccaaaagggatgtgtcta |
47728235 |
T |
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| Q |
318 |
tccctgaagtgtacttaccagttggaaagttaggcccaccaaatctgggccaaagcccattaaacagaaccatattagccttcttttc |
405 |
Q |
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| T |
47728234 |
tccctgaagtgtacttaccagttggaaagttaggcccaccaaatctgggccaaagcccattaaacagaaccatattagccttcttttc |
47728147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 47705586 - 47705537
Alignment:
| Q |
245 |
ttcaaaaacttcacaagagtcttatgcaatgccaacacttctgaagggtt |
294 |
Q |
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| T |
47705586 |
ttcaagaacttaataaaagtgttatgcaatgccaacacttctgaagggtt |
47705537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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