View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18538_high_2 (Length: 365)
Name: NF18538_high_2
Description: NF18538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18538_high_2 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 34014419 - 34014661
Alignment:
| Q |
11 |
cacagaagcaaggtctacatgtttagctagtgctgataactatgaatttggagtttatgaatggagtgttcaacttgttacaaataatagtcgaattgaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34014419 |
cacagaagcaaggtctacatgtttagctagtgctgataactatgaatttggagtttatgaatggagtgttcaacttgttacaaataatagtcgaattgaa |
34014518 |
T |
|
| Q |
111 |
aagatactccttcctatcttttggggcctaatgactctcaggtattttctcatcacattgtacacttcatgattttaaattgtagttgcgatgatgacta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34014519 |
aagatactccttcctatcttttggggcctaatgactctcaggtattttctcatcacattgtacatttcatgattttaaattgtagttgcgatgatgacta |
34014618 |
T |
|
| Q |
211 |
atgactatggttacgctgcaaacctttatattacggtaaaatg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34014619 |
atgactatggttacgctgcaaacctttatattatggtaaaatg |
34014661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 227 - 365
Target Start/End: Original strand, 3160687 - 3160825
Alignment:
| Q |
227 |
tgcaaacctttatattacggtaaaatgcaggaaaatactgccgatgcggtggaaactgcggctgcgatgccgcagagaccccaaaattctttatcttgtg |
326 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||| ||| ||||| |||||||||||||||||||||| ||| | |
|
|
| T |
3160687 |
tgcaaacctttatattacggtaaagtgcaggaaaatacggccgatgcggtcgaaattgcggttgctatgccacagagaccccaaaattctttatattgcg |
3160786 |
T |
|
| Q |
327 |
gccacattctcggttgcggacctcaatttaaaaccattt |
365 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
3160787 |
gccacattctcagttgcggacctcaatttaaaaccattt |
3160825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 10164137 - 10164093
Alignment:
| Q |
218 |
tggttacgctgcaaacctttatattacggtaaaatgcaggaaaat |
262 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
10164137 |
tggttacgctgcaaacctttatattgcggtaaaatacaggcaaat |
10164093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University