View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18538_high_4 (Length: 307)
Name: NF18538_high_4
Description: NF18538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18538_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 8441021 - 8441298
Alignment:
| Q |
17 |
atgaatgtggtaatattttaggaacnnnnnnngcacagtgtattgttttttagtggcaaatctattaagaaaagaaaacaagaataatttcaactctcga |
116 |
Q |
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| T |
8441021 |
atgaatgtggtaatattttaggaacaaaaaaagcacagtgtattgttttttagtggcaaatctattaagaaaagaaaacaagaataatttcaactctcga |
8441120 |
T |
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| Q |
117 |
tgatgtatcgtgtacgtatagatcaccaatcgcttacatttagggatctcaatattccattggtggagttaagcaattatactagtgagcacgaaataac |
216 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8441121 |
tgatgtatcgtgtacgtatagatctccaatcgcttacatt-agggatctcaatattccattggtggagttgagcaattatactagtgagcacgaaataac |
8441219 |
T |
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| Q |
217 |
tagaccgtgtcacaagcttcacgtatttataaaatctgcacattcatgatcgttggatcgagatagtacggttcatatc |
295 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
8441220 |
tagaccatgtcacaagcttcacgtatttataaaatccgcacatttatgatcgttggatcgagatagtacgattcatatc |
8441298 |
T |
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