View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18538_high_5 (Length: 306)
Name: NF18538_high_5
Description: NF18538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18538_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 45282946 - 45283230
Alignment:
| Q |
16 |
ccttggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcggaagcagagatccatgaagggta |
115 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
45282946 |
ccttggcaacaacagcattaggcataatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagaagagatccatgaagggta |
45283045 |
T |
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| Q |
116 |
tccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggacaaacca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283046 |
tccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggacaaacca |
45283145 |
T |
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| Q |
216 |
gtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcatctcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45283146 |
gtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcac |
45283230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 45274707 - 45274989
Alignment:
| Q |
18 |
ttggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcggaagcagagatccatgaagggtatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45274707 |
ttggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatc |
45274806 |
T |
|
| Q |
118 |
cttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggacaaaccagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274807 |
cttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagt |
45274906 |
T |
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| Q |
218 |
cacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcatctcac |
300 |
Q |
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|||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||| |
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| T |
45274907 |
cacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcac |
45274989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 45271174 - 45271456
Alignment:
| Q |
18 |
ttggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcggaagcagagatccatgaagggtatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |
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| T |
45271174 |
ttggcaacaacagcattaggcctaatatttgctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatc |
45271273 |
T |
|
| Q |
118 |
cttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggacaaaccagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
45271274 |
cttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagt |
45271373 |
T |
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| Q |
218 |
cacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcatctcac |
300 |
Q |
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|||||||||||||||||| || || |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
45271374 |
cacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcac |
45271456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 45294334 - 45294618
Alignment:
| Q |
16 |
ccttggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcggaagcagagatccatgaagggta |
115 |
Q |
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||||||||||||||||||||| || || |||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45294334 |
ccttggcaacaacagcattagccccaacatttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggta |
45294433 |
T |
|
| Q |
116 |
tccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggacaaacca |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45294434 |
tccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaacca |
45294533 |
T |
|
| Q |
216 |
gtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcatctcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
45294534 |
gtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcac |
45294618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 45303294 - 45303578
Alignment:
| Q |
16 |
ccttggcaacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcggaagcagagatccatgaagggta |
115 |
Q |
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||||||||||||||||||||| || || |||||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45303294 |
ccttggcaacaacagcattagccccaacatttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggta |
45303393 |
T |
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| Q |
116 |
tccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggacaaacca |
215 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303394 |
tccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaacca |
45303493 |
T |
|
| Q |
216 |
gtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcatctcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |
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| T |
45303494 |
gtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcac |
45303578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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