View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18538_low_3 (Length: 359)
Name: NF18538_low_3
Description: NF18538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18538_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 43394981 - 43394655
Alignment:
| Q |
1 |
tgcattaaatctatgttattagtacactgtcatttcatcaaggaatattattcttcttttaatatatatttttctatgtatcttgaggattgatagaatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43394981 |
tgcattaaatctatgttattagtacactgtcatttcatcaaggaatattattcttcttttaatatatatttttctatgtatcttgaggattaatagaatt |
43394882 |
T |
|
| Q |
101 |
gttggtgtttt-gtgtgaaaatgcagatgcaggaagagctttcaagaaatgaagaaagaatatgtagcattgagaaagagacttgaaacttattttcaat |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43394881 |
gttggtgtttttgtgtgaaaatgcagatgcaggaagagctttcaacaaatgaagaaagaatatgtagcattgagaaagagacttgaaacttattttcaat |
43394782 |
T |
|
| Q |
200 |
tggctaggcaagctgggccaatggatagagcatgtcgccctaagtaaagaccttagaaaaatat------atatgcatttaatgaaggcatgcaaaatgt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43394781 |
tggctaggcaagctgggccaatggatagagcatgtcgccctaagtaaagaccttagaaaaatatatatatatatgcatttaatgaaggcatgcaaaatgt |
43394682 |
T |
|
| Q |
294 |
aattggtgatttttgtaactacgaagg |
320 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
43394681 |
aattggtgatttttgtaactacgaagg |
43394655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 120 - 312
Target Start/End: Complemental strand, 43406987 - 43406795
Alignment:
| Q |
120 |
atgcagatgcaggaagagctttcaagaaatgaagaaagaatatgtagcattgagaaagagacttgaaacttattttcaattggctaggcaagctgggcca |
219 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
43406987 |
atgcagatgtaggaagagctttcaacaaatgaagagagagtatgcagcattgagaaagagacttgaaacttattttcagctggctaggcaagctggtcca |
43406888 |
T |
|
| Q |
220 |
atggatagagcatgtcgccctaagtaaagaccttagaaaaatatatatgcatttaatgaaggcatgcaaaatgtaattggtgatttttgtaac |
312 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| | | ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
43406887 |
ttggatagagcatgtcgccctaagtaaacaccttatagagatatatatgaatttaatgaagccatgcaaaatgtaattggtgaattttgtaac |
43406795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University