View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18538_low_7 (Length: 270)
Name: NF18538_low_7
Description: NF18538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18538_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 34014735 - 34014987
Alignment:
| Q |
1 |
ccgttgttgtagttaaggatgcttcatatgcactttatatatctcattgtcacaaaagttttttgttgatgtggtcagcacttttgggaacctccagagt |
100 |
Q |
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| T |
34014735 |
ccgttgttgtagttaaggatgcttcatatgcacattatatatctcattgtcacaaaagttttttgttgatgtggtcagcacttttgggaacctccagagt |
34014834 |
T |
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| Q |
101 |
acaacggaaaggatggaagtcgttttcaacactattatattaaccagtggcctccttctagtcactatgctaattggaaacatcaaggtacgtaataatt |
200 |
Q |
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| T |
34014835 |
acaacggaaaggatggaagtcgttttcaacactattatattaaccagtggcctccttctagtcactatgctaattggaaacatcaaggtacgtaataatt |
34014934 |
T |
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| Q |
201 |
aatatggacttacttaggtcatatattaaacaaaaataattcatctatttgat |
253 |
Q |
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| T |
34014935 |
aatatggacttacttaggtcatatattgaacaaaaataattcatctatttgat |
34014987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 22847724 - 22847837
Alignment:
| Q |
77 |
agcacttttgggaacctccagagtacaacggaaaggatggaagtcgttttcaacactattatattaaccagtggcctccttctagtcactatgctaattg |
176 |
Q |
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||||||||||| |||||| |||| |||||||| || | ||||| |||||||||| || || || || ||||| || ||||||||||||||| | || | |
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| T |
22847724 |
agcacttttggaaacctcgagagcacaacggattggctagaagtagttttcaacatcataatcttgactagtggacttcttctagtcactatgttgatcg |
22847823 |
T |
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| Q |
177 |
gaaacatcaaggta |
190 |
Q |
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| T |
22847824 |
gaaacatcaaggta |
22847837 |
T |
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