View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18539_high_2 (Length: 251)
Name: NF18539_high_2
Description: NF18539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18539_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 70 - 178
Target Start/End: Complemental strand, 28318556 - 28318448
Alignment:
| Q |
70 |
attatagtatatatttgtcactacattatcctatctggtcnnnnnnnaagttgacaagttatcctatctgtcattagaaaatccgtaacaattttattgg |
169 |
Q |
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| T |
28318556 |
attatagtatatatttgtcactacattatcctatctggtcttttttttagttgacaagttatcctatctgtcagtagaaaatccgtaacaattttattgg |
28318457 |
T |
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| Q |
170 |
cttcgaaaa |
178 |
Q |
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| T |
28318456 |
cttcgaaaa |
28318448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 28318035 - 28317979
Alignment:
| Q |
175 |
aaaatgtgcttaaaagatttaaaaactttcttatataagacacatatttaaggacga |
231 |
Q |
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| T |
28318035 |
aaaatgtgcttaaaagatttaaaaactttcttatataagacatatatttaaggacga |
28317979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 28318615 - 28318583
Alignment:
| Q |
16 |
ataaagttaagtataacgattgatgatttgctc |
48 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
28318615 |
ataaagttaagtataacgattgatgatttgctc |
28318583 |
T |
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